Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq3161 307 3e-79 seq2164 104 7e-18 seq213 89.7 2e-13 seq4603 82.4 2e-11 >seq3161 Length=578 Score = 307 bits (340), Expect = 3e-79 Identities = 305/395 (77%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 29221 GCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCT 29280 |||||||||||||| | || || || || ||| | ||||| || ||||| || ||| Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 29281 CAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCAC 29340 ||| |||||||||||| || ||||||||||| ||||| ||||| || || || ||| Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 29341 GGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACAC 29400 ||||||||||| ||| | ||||||||||| ||||| ||||| || |||||||| ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 29401 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 29460 |||||||||||||| ||||| || || || || |||||| |||| | || | ||||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 29461 ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGT 29520 ||||| || || || |||||||| ||||| |||||||| | | ||| | |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 29521 GTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCAT 29580 || || || ||||||| ||| | |||| || |||||||| || | ||||||||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 29581 GAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||||||| ||||| ||||||||||| || |||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGACTTGGC 176 >seq2164 Length=396 Score = 104 bits (114), Expect = 7e-18 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 28861 TTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 28920 || ||||| |||||||||||| |||||| || |||||||| |||||||| || || | | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 28921 CAACTTGTGGTCTTCCACTTCCTCATTGGCGTCT-ATGCTTACATGGGACGCGAGTGGGA 28979 ||||| | || | ||||||| || | ||| ||| ||| |||||||| || |||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 28980 ACTT 28983 |||| Sbjct 212 ACTT 215 >seq213 Length=407 Score = 89.7 bits (98), Expect = 2e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 28994 TAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGG 29053 |||| ||| | || ||||| ||| || ||||| || || || ||||| || |||| | Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 29054 TTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTT 29113 | ||| || |||||||| ||||||||||||| || |||| ||||| | || |||| Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 29114 CAGGCACCTTCAACTACAT 29132 | || || ||||||| ||| Sbjct 98 CGGGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 29137 GTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGA 29196 || |||||||| || || ||||| || |||||||| ||||||||||| || |||||||| Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 29197 GTGTTCGGTGGCTCGCTATT 29216 ||||| ||||| || || || Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146624512640486