Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq3161 307 3e-79 seq2164 104 7e-18 seq4603 95.1 3e-15 seq1029 84.2 6e-12 seq213 84.2 6e-12 >seq3161 Length=578 Score = 307 bits (340), Expect = 3e-79 Identities = 305/395 (77%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 19312 GCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCT 19371 || ||||||||||| | || || || || ||| | |||||||||||||| | | |||| Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 19372 CAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCAT 19431 ||| ||| |||||||| || ||||||||||| ||||| |||||||||||||| || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 19432 GGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACAT 19491 || || |||||||| || || ||||| ||||| || |||||||| |||||||| || Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 19492 TTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACC 19551 ||||| | ||||| |||||||| ||||| || ||||| | || ||||| | ||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 19552 ATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGT 19611 |||||||||||| | || || || ||||| |||||||| | ||||| | |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 19612 GTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCAC 19671 || || | ||||||| |||||| |||| ||||||||||| || | || ||||||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 19672 GAACGTAATGCTCATAACTTCCCACTTGATTTGGC 19706 || ||||| ||||| ||||||||||| || ||||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGACTTGGC 176 >seq2164 Length=396 Score = 104 bits (114), Expect = 7e-18 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 18952 TTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTC 19011 || ||||| |||||||||||| |||||| || |||||||| |||||||| || || | | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 19012 CAACTTGTGGTCTTCCACTTCCTCATTGGCGTCT-ATGCTTACATGGGACGCGAGTGGGA 19070 ||||| | || | ||||||| || | ||| ||| ||| |||||||| || |||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 19071 ACTT 19074 |||| Sbjct 212 ACTT 215 >seq4603 Length=650 Score = 95.1 bits (104), Expect = 3e-15 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 19226 TTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTG 19285 |||| ||||| ||||| || |||||||| |||||||| ||||||||||| ||||| |||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 19286 GTGTGTTCGGCGGGTCACTATT 19307 ||||||| || || ||||| || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq1029 Length=1000 Score = 84.2 bits (92), Expect = 6e-12 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||||| ||||| || || || || ||||| ||||| || || |||||||| || Sbjct 649 TTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 590 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || ||| | | || ||| | ||| ||||||||||| || ||||||| || Sbjct 589 ATGATCCCTACTCTTTTGACTGCAACT-TCTGTATTCATTATTGCATTTGTTGCTGCTCC 531 Query 18843 TCCTGTAGACATT 18855 ||||||||||||| Sbjct 530 TCCTGTAGACATT 518 >seq213 Length=407 Score = 84.2 bits (92), Expect = 6e-12 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 19085 TAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGG 19144 |||| ||||| |||||||| ||| || ||||| || || ||||| || || |||| | Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 19145 TCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTA 19204 | ||| | |||| ||| | ||||||||||| || |||| |||||| | || ||| Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 19205 GTGGTACGTTCAACTACAT 19223 ||||| ||||||| ||| Sbjct 98 CGGGTACTTTCAACTTCAT 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141109258134078