Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1947 389 5e-103 seq3161 356 3e-93 seq12 223 4e-53 seq213 118 1e-21 seq2164 114 1e-20 seq4603 98.7 1e-15 seq53 95.1 1e-14 >seq1947 Length=534 Score = 389 bits (430), Expect = 5e-103 Identities = 404/530 (76%), Gaps = 0/530 (0%) Strand=Plus/Minus Query 159841 TTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTC 159900 ||||||||||| || || || || |||||||| | ||| | | ||| | || || ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 159901 CACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCA 159960 ||||||||||| || ||||| ||||| |||||||| || ||||| | |||| | ||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 159961 CTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAA 160020 || | |||||||| ||||| || || || |||||||| |||||||||||||||| Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 160021 GCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACT 160080 ||||||||||| ||||| | |||||||| | |||||||| || |||||||| ||| Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 160081 GCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCAT 160140 |||||||| |||||||| |||||||| || || ||||| ||||||||||| ||| | || Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 160141 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGT 160200 || |||||| | ||||| || || | ||||| |||| ||||||| | | || Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 160201 CTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGAT 160260 || || | ||| | |||||||| || ||||| ||| |||||| | ||||||||||| Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 160261 CCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGG 160320 |||||||| || ||||||||||| || |||||| | ||||| ||||| |||| || ||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGG 53 Query 160321 ATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGT 160370 ||||| || || || ||||| ||||| || | ||||||||||| || Sbjct 52 ATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq3161 Length=578 Score = 356 bits (394), Expect = 3e-93 Identities = 321/402 (80%), Gaps = 1/402 (0%) Strand=Plus/Minus Query 158256 TTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAA 158315 ||||||| || ||||| || | || ||||| || || | |||||||| ||||| | Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 158316 CAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTG 158375 || || ||| ||||| |||||||||||||||||||| || |||||||| |||| Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 158376 CAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTT 158435 | || || || ||||| |||||| | ||||||||||||||||||||||||||||| |||| Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 158436 CCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCG 158495 | | |||||||||||||||||||||||||| || || ||||||||||| || ||||| Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 158496 TGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTC 158555 | || ||||||||||||||||| ||||||||||||||||||||||| | |||| || Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTC 279 Query 158556 AGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAG 158615 | |||||||| | ||||| |||| || | | ||||| ||| || |||||||||| Sbjct 278 AAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAG 219 Query 158616 TTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTG 158657 | ||||| ||||||||||| |||||||||||||| || |||| Sbjct 218 TAATGCACGAGCGTAACGCTCACAACTTCCCACTAGA-CTTG 178 >seq12 Length=429 Score = 223 bits (246), Expect = 4e-53 Identities = 301/417 (72%), Gaps = 2/417 (0%) Strand=Plus/Minus Query 159415 TTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATATGGCCATTGGC 159474 ||||| || || ||||||||||| | |||||| | || |||||| | ||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 159475 GGTTGGCTTACTGGCACGACTTTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCC 159534 || ||| |||| || || ||||| | || ||||||||| ||||| | || ||||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 159535 TACCTTGAAGGTGCTAATTTTCTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGT 159594 ||||| |||||| || || | || ||||| || ||||| || || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 159595 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAA 159654 ||||| | || | || ||||| || ||| ||||||| |||||| ||| ||||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 159655 CTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATG 159714 | || || ||||| ||||||| ||||| || ||||| |||||||| || || || ||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 159715 CTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTT 159773 || || || ||||| |||| || ||| || | |||||||||||||||||||| || Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCT-GTAAAGCTTCGTCCTTACAATGCTATTGCATT 70 Query 159774 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTC 159830 ||| | || || || || || || || ||| | |||||||| || || || || Sbjct 69 CTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATC 13 >seq213 Length=407 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 158036 TTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCA 158095 ||||||||||| || |||||| |||||| || ||||| ||||| || || || | ||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 158096 GTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 158155 |||||| | |||| || ||||||||||||| ||||| || | |||||| || || || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 158156 TCTGGTACTTTTAACTACAT 158175 || |||||||| |||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 157904 TTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTC 157963 || ||||| || |||||||| || || || ||||| ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 157964 CAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAA 158023 ||||| | || | ||||||| | | ||||||| ||| ||||| |||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 158024 CTCTCTTACCGTT 158036 || |||| ||||| Sbjct 213 CTTTCTTTCCGTT 225 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158178 TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTG 158237 |||| |||||||| || |||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 158238 GGGTATTCGGTGGATCTCTTTT 158259 | || || ||||| || ||||| Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 157808 GACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 157867 ||||| ||||| |||||||| ||||||| || | || || |||||||||||||||||| Sbjct 80 GACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGGT 21 Query 157868 GCAGTTGTTCCTAGTTCAAA 157887 ||||||||||||| |||||| Sbjct 20 GCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572855022385200