Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq3161 363 2e-95 seq1947 304 1e-77 seq12 214 2e-50 seq213 122 1e-22 seq2164 104 3e-17 seq53 87.8 2e-12 seq4603 84.2 2e-11 seq2475 82.4 9e-11 >seq3161 Length=578 Score = 363 bits (402), Expect = 2e-95 Identities = 318/396 (80%), Gaps = 0/396 (0%) Strand=Plus/Minus Query 160542 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACA 160601 ||||| || |||||||| | || ||||| || || | |||||||| ||||| | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 160602 GAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCA 160661 || || ||| ||||| |||||||||||||| ||||| || |||||||| || || Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 160662 GCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCA 160721 || || |||||||| |||||| | ||||||||||| || |||||||||||||| ||||| Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 160722 CTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTT 160781 |||||||||||||| || |||||||||||||| || ||||||||||||||||||||| | Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 160782 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAA 160841 ||||||||||||||||| ||||||||||||||||||||||| | | || |||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 160842 GGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTT 160901 ||||||||| | ||||| |||| ||| | | || |||||| || ||||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 160902 ATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 160937 ||||| ||||||||||| |||||||||||||| ||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 304 bits (336), Expect = 1e-77 Identities = 387/533 (73%), Gaps = 0/533 (0%) Strand=Plus/Minus Query 162148 TTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGAT 162207 |||| || || |||||| ||||| |||||||| | ||| | | || | ||||| | Sbjct 534 TTTTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGT 475 Query 162208 TCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAG 162267 |||| |||||||| || ||||| ||||| |||||||| || ||||| | |||| | | Sbjct 474 TCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTG 415 Query 162268 CACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAAC 162327 ||||||| | ||| ||||| || | |||||||| || || | | || |||||||| Sbjct 414 CACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATG 355 Query 162328 AAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCA 162387 |||||||| || ||||| || | || |||| |||||||| || |||||||| | Sbjct 354 GTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAA 295 Query 162388 CTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTC 162447 |||||||||| |||||||| |||||||| || | || || ||||||||||| ||| | | Sbjct 294 CTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGC 235 Query 162448 ATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTG 162507 | || |||||| | ||||| || || | ||||| |||| ||||||| | | | Sbjct 234 ACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAG 175 Query 162508 GTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAG 162567 | || || || ||| | |||||||| || ||||| ||| ||||| | |||||||||| Sbjct 174 GCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAG 115 Query 162568 ATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCAT 162627 | ||||| || ||||| |||||||| || ||||| || | || ||||| | || |||| Sbjct 114 ACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCAT 55 Query 162628 GGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTT 162680 || | || || ||||| || || || || || | ||||| || || ||| Sbjct 54 GGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 214 bits (236), Expect = 2e-50 Identities = 308/431 (71%), Gaps = 4/431 (1%) Strand=Plus/Minus Query 161723 TTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGG 161782 ||| || || ||||| |||||||| | || ||| | || ||||||||||| | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 161783 CGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTC 161842 || ||| |||| || || ||||||| ||| ||||| || || || | || ||||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 161843 CTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGG 161902 || || || ||| ||||| | ||||| |||| |||||||| || ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 161903 TCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCA 161962 ||||| | || | || ||||| || ||||||||||| || ||| || ||| ||| Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 161963 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCAT 162022 | | || || || |||| ||||| || || |||||||| ||||| |||||||| ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 162023 GCTCCGTCAGTTTGAACTGGCACG-TCT-TATTGGTATCCGTCCCTACAATGCTATTGCG 162080 ||| ||||||||||| || ||||| ||| || | | ||||| |||||||||||||| Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAG--CTTCGTCCTTACAATGCTATTGCA 72 Query 162081 TTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCC 162140 ||||| | || || || || || || || ||| | ||||| || | || || || Sbjct 71 TTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCA 12 Query 162141 AGTTGGTTTTT 162151 |||||||||| Sbjct 11 GGTTGGTTTTT 1 >seq213 Length=407 Score = 122 bits (134), Expect = 1e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 160320 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCT 160379 ||||||||||| || |||||| |||||| || ||||| ||||| || || || ||||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 160380 GTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 160439 |||||| || | || || ||||||||||||| ||||| || | |||||| || || || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 160440 TCTGGTACTTTTAACTACAT 160459 || |||||||| |||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 104 bits (114), Expect = 3e-17 Identities = 105/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 160188 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 160247 || || || || |||||||| || ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 160248 CAACTCGTAGTATTTCACTTCCTTATCGGCATCT-ATGCATATATGGGACGTGAGTGGGA 160306 ||||| | || | |||||| | | ||||||| ||| || ||||| ||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 160307 ACTTTCATACCGTT 160320 |||||| | ||||| Sbjct 212 ACTTTCTTTCCGTT 225 >seq53 Length=414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 160091 CGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 160150 |||||| ||||||||||| || ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 160151 TGCAGTTGTTCCATCTTCCAA 160171 |||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 >seq4603 Length=650 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 160462 TTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTG 160521 |||| |||||||| || ||||| ||||||||||| || ||||||||||| || ||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 160522 GGGTATTCGGTGGATC 160537 | || || ||||| || Sbjct 22 GTGTGTTTGGTGGTTC 7 >seq2475 Length=244 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/101 (79%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 18077 TCTATACTGA--TGGGAGTGTGGCGGAATCGGTAGACGCACCAGACTTAAAATCTGTTGA 18134 ||| || ||| ||||||||||||||||| ||||||||| | ||||||||||| ||||| Sbjct 72 TCTGTAGTGAATTGGGAGTGTGGCGGAATTGGTAGACGCTACGGACTTAAAATCCGTTGA 131 Query 18135 -GCAATATGCTCGTGAGAGTTCAAGTCTCTCTACTCCTATA 18174 | | | | ||||||| |||||| || ||| | ||| ||| Sbjct 132 CCCTAAACGGTCGTGAGGGTTCAATTCCCTCCATTCCCATA 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559339009264200