Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq3161 363 2e-95 seq1947 349 4e-91 seq12 212 8e-50 seq213 136 5e-27 seq4603 98.7 1e-15 seq2164 96.9 4e-15 seq53 87.8 2e-12 >seq3161 Length=578 Score = 363 bits (402), Expect = 2e-95 Identities = 323/404 (80%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 181569 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCA 181628 |||||||||||||| ||||| || || || || ||||||| || ||||| | || || Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 181629 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCAC 181688 ||| ||||||||||||||| ||||||||||| || |||||||| || || || ||| Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 181689 GGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCAC 181748 |||||||||||||| | ||||||||||| ||||||||||||||||| ||||| || ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 181749 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 181808 |||||||| || ||||||||||||||||| ||||||||||| || || || | ||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 181809 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGT 181868 |||||||| ||||| || || |||||||||||||||||| | | ||| ||||| ||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 181869 GTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCAC 181928 || ||||||| |||| ||| | |||||||||| || || |||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 181929 GAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGA 181972 ||||| ||||| ||||||||||| || || | ||| ||| ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq1947 Length=534 Score = 349 bits (386), Expect = 4e-91 Identities = 397/533 (74%), Gaps = 0/533 (0%) Strand=Plus/Minus Query 182821 TTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTT 182880 |||| || || ||||||||| || || |||||| | ||| | | ||| | || || | Sbjct 534 TTTTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGT 475 Query 182881 TCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAG 182940 |||||||||||||||| ||||| ||||| |||||||| || ||||| | | || | | Sbjct 474 TCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTG 415 Query 182941 CACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAAC 183000 |||| || |||| || ||||| | ||||| ||||| || ||| |||||||||||| Sbjct 414 CACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATG 355 Query 183001 AGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTA 183060 ||||||||||| |||||| || | ||||||| || |||||||| || ||||| | Sbjct 354 GTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAA 295 Query 183061 CAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGC 183120 | || || ||||| |||||||| ||||| || || || || || ||||||||||||| Sbjct 294 CTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGC 235 Query 183121 ACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTG 183180 ||||||| ||| | |||||||| || | ||||||||| | | ||||||| || | | Sbjct 234 ACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAG 175 Query 183181 GGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAG 183240 | || || || || | ||||||||||| || || |||||||||| | |||||||||| Sbjct 174 GCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAG 115 Query 183241 ATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTT 183300 | ||||| ||||| || ||||||||||| |||||| | | || ||||| | || || | Sbjct 114 ACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCAT 55 Query 183301 GGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTT 183353 || |||| || || || ||||| ||||| | | |||||||| || ||| Sbjct 54 GGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 212 bits (234), Expect = 8e-50 Identities = 306/429 (71%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 182397 TTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGC 182456 ||||| || || ||||||||||| | |||||| | || |||||||||||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 182457 GGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCC 182516 || ||| |||| || || |||| || || ||||||||| ||||| | || ||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 182517 TATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGT 182576 || || |||||| ||||| | || ||||| || || || || || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 182577 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 182636 ||||| | || | || ||||| || ||| |||| || | ||| || ||||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 182637 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATG 182696 | || || || |||| || || ||||| || ||||| |||||||| ||||| |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 182697 CTTAGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCTTACAATGCGATTGCTTT 182755 || | || ||||| ||||| ||| ||| | || | ||||||||||| ||||| || Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGCTTC-GTCCTTACAATGCTATTGCATT 70 Query 182756 TTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTC 182815 || | || || || || ||||| ||||||| | ||||||||| | ||||| || Sbjct 69 CTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCAGG 10 Query 182816 TTGGTTTTT 182824 ||||||||| Sbjct 9 TTGGTTTTT 1 >seq213 Length=407 Score = 136 bits (150), Expect = 5e-27 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 181341 TTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCT 181400 ||||||||||| || |||||| ||| || |||||||| ||||| ||||| || ||||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 181401 GTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATC 181460 |||||| | |||| || ||||||||||||| ||||| |||| |||||||| ||||| Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 181461 TCTGGTACATTCAACTACAT 181480 || ||||| ||||||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 181483 TTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAG 181542 ||||||||||||| ||||||||||| || ||||| || ||||||||| | ||||| || | Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 181543 GTGTATTTGGTGGTTCACTGTT 181564 |||| |||||||||||||| || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq2164 Length=396 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 181209 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 181268 || || || || |||||||| || ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 181269 CAACTCGTAGTCTTTCACTTCCTTATCGGCAT-TTATGCATACATGGGACGTGAATGGGA 181327 ||||| | || | |||||| | | ||||| | ||| |||||||| ||||| ||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 181328 ACTCTCTTACCG 181339 ||| |||| ||| Sbjct 212 ACTTTCTTTCCG 223 >seq53 Length=414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 181112 CGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 181171 |||||| ||||||||||| || ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 181172 TGCAGTTGTTCCATCTTCCAA 181192 |||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614436356952480