Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3161 356 3e-93 seq1947 345 6e-90 seq12 206 4e-48 seq213 136 6e-27 seq2164 123 4e-23 seq53 105 1e-17 >seq3161 Length=578 Score = 356 bits (394), Expect = 3e-93 Identities = 325/410 (79%), Gaps = 0/410 (0%) Strand=Plus/Minus Query 175050 TTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACT 175109 |||||||| ||||| |||||| | || || || || ||| ||||||| || ||||| | Sbjct 576 TTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAAC 517 Query 175110 GAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCA 175169 || || ||| ||||||||||||||| ||||||||||| || || ||||| || || Sbjct 516 GAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCT 457 Query 175170 GCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCA 175229 || || || ||||| |||||| | ||||||||||||||||||||||||||||| || || Sbjct 456 GCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCT 397 Query 175230 CTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTT 175289 || ||||||||| | || |||||||| || || |||||||||||||| || |||||| | Sbjct 396 CTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATC 337 Query 175290 TCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAA 175349 || || |||||||||||||| || ||||||||||||||||||||||| | ||| ||| Sbjct 336 TCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAA 277 Query 175350 GGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTA 175409 ||| | ||| | ||||| |||| || | | ||| | ||| || || ||||||||| Sbjct 276 GGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTA 217 Query 175410 ATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGCAGCAGCTGA 175459 ||||| ||| | || || ||||||||||||||||| |||||| ||| ||| Sbjct 216 ATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq1947 Length=534 Score = 345 bits (382), Expect = 6e-90 Identities = 395/531 (74%), Gaps = 0/531 (0%) Strand=Plus/Minus Query 176313 TTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTC 176372 ||||| || |||||||||||| |||||||| | ||| | | || | || || ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 176373 CACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCA 176432 |||||||||||||| ||||| ||||| |||||||| || ||||| | |||| | ||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 176433 CTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAG 176492 || || | |||||| ||||||| || ||||| || || || | |||||||||||| Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 176493 AACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACT 176552 ||||| ||| ||||||| || | || |||| ||||||||||| || ||||| ||| Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 176553 GCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCAC 176612 || ||||| |||||||| || ||||| || || || || ||| ||||||||| | ||| Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 176613 TTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGG 176672 ||||| ||| | ||||| || || | ||||||||| | |||||| || | || Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 176673 CTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGAT 176732 || || || || | ||||||||||| || || ||||||||| | ||||||||||| Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 176733 CCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGG 176792 ||||| || ||||| ||||||||||| |||||| | | |||||||| | |||||||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGG 53 Query 176793 ATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTT 176843 ||||| || || || ||||| || | |||||||||| || || ||| Sbjct 52 ATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 206 bits (228), Expect = 4e-48 Identities = 293/409 (72%), Gaps = 6/409 (1%) Strand=Plus/Minus Query 175897 TTGGCTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTA 175956 |||| |||||||| || |||||| | || |||||||||||| | || |||||| ||| Sbjct 418 TTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGTGGCTGGTTTA 359 Query 175957 CTGGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGG 176016 | || || ||||| || || ||||||||| || || | || ||| || || || | Sbjct 358 CAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCATACCTAGAAG 299 Query 176017 GTGCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTC 176076 || ||||| | ||||| || || || ||||| || | ||||| ||||| | | Sbjct 298 GTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGGCATTCATTGC 239 Query 176077 TTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGC 176136 | | || ||||| || || |||| || |||||| || ||| |||| | || || | Sbjct 238 TCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAATTGGGTGGTC 179 Query 176137 TTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGT 176196 ||||| ||||||| ||||| || ||||| |||||||| ||||| |||||||| ||||||| Sbjct 178 TTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATGCTGCGTCAGT 119 Query 176197 TTGAACTGGCAAGACTCATTGGTA---TCCGTCCCTACAACGCTATTGCATTCAGTGGTC 176253 |||| || ||| | ||| || | | ||||| ||||| |||||||||||| | | Sbjct 118 TTGAGCTTGCACG-CTC--TGTAAAGCTTCGTCCTTACAATGCTATTGCATTCTCAGCAC 62 Query 176254 CTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATC 176302 | ||||| || || || |||||| | | || || ||||| ||||| Sbjct 61 CAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATC 13 >seq213 Length=407 Score = 136 bits (150), Expect = 6e-27 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 174828 TTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCA 174887 ||||||||| | ||||||||| |||||| |||||||||||||||||||| ||| | || Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 174888 GTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATC 174947 |||||| | |||| || |||||||||||||||||||||||| ||||| | || || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 174948 TCTGGAACATTCAACTACAT 174967 || || || ||||||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 123 bits (136), Expect = 4e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 174696 TTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTC 174755 || ||||| || |||||||| || |||| ||||||||||| |||||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 174756 CAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGGGACGTGAGTGGGAA 174815 |||||| | || | ||||||| | | || |||| | ||| ||||| |||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 174816 CTCTCTTATCGTT 174828 || |||| |||| Sbjct 213 CTTTCTTTCCGTT 225 >seq53 Length=414 Score = 105 bits (116), Expect = 1e-17 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 174599 CGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGG 174658 |||||| ||||||||||||||| ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 174659 TGCAGTTGTTCCTAGTTCAAA 174679 |||||||||||||| |||||| Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729714352885080