Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq3161 360 2e-94 seq1947 313 3e-80 seq12 212 8e-50 seq213 131 2e-25 seq2164 109 7e-19 seq4603 95.1 1e-14 seq53 93.3 5e-14 >seq3161 Length=578 Score = 360 bits (398), Expect = 2e-94 Identities = 322/404 (80%), Gaps = 0/404 (0%) Strand=Plus/Minus Query 178437 GCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCA 178496 |||||||||||||| ||||| || || || || | |||||||| ||||| | ||||| Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 178497 CAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 178556 ||| |||||| |||||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 178557 GGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCAC 178616 || ||||| |||||| | ||||||||||| ||||||||||||||||| ||||| || ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 178617 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 178676 |||||||| || ||||||||||||||||| ||||||||||| || || || | ||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 178677 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGT 178736 |||||||| ||||| || || ||||||||||||||||| | | ||| ||||| ||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 178737 GTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCAC 178796 || ||||||| |||| ||| | |||||||||| || || |||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 178797 GAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGA 178840 ||||| ||||| ||||||||||| || || | ||| ||| ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGA 167 >seq1947 Length=534 Score = 313 bits (346), Expect = 3e-80 Identities = 389/533 (73%), Gaps = 0/533 (0%) Strand=Plus/Minus Query 179683 TTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTT 179742 |||| || || ||||||||| || || |||||| | ||| | || ||| | || || | Sbjct 534 TTTTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGT 475 Query 179743 TCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAG 179802 ||||||||||||| || ||||| ||||| |||||||| || ||||| | |||||| | Sbjct 474 TCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTG 415 Query 179803 CACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAAC 179862 |||| || |||| || ||||| | || || ||||| || ||| |||||||||||| Sbjct 414 CACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATG 355 Query 179863 AAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCA 179922 ||||| || || ||||| || | || |||| |||||||| || |||||||| | Sbjct 354 GTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAA 295 Query 179923 CTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTC 179982 |||||||||| |||||||| |||||||| || | ||||| ||||||||||| ||| | | Sbjct 294 CTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGC 235 Query 179983 ATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTG 180042 | || |||||| | ||||| || || | ||||| |||| ||||||| | | | Sbjct 234 ACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAG 175 Query 180043 GTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAG 180102 | || || || ||| | |||||||| || ||||| ||| ||||| | |||||||||| Sbjct 174 GCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAG 115 Query 180103 ATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCAT 180162 | || || || || ||||||||||| || ||||| | | || ||||| | || |||| Sbjct 114 ACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCAT 55 Query 180163 GGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTT 180215 || |||| | || || ||||| || | | |||||||| || || ||| Sbjct 54 GGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 212 bits (234), Expect = 8e-50 Identities = 306/429 (71%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 179259 TTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGC 179318 ||||| || || ||||||||||| | |||||| | || |||||||||||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 179319 GGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCC 179378 || ||| |||| || || |||| || || ||||||||| ||||| | || ||||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 179379 TATCTTGAGGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGT 179438 || || || ||| ||||| | || ||||| || || || || || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 179439 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 179498 ||||| | || | || ||||| || ||| |||| || | ||| || ||||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 179499 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATG 179558 | || || || |||| || || ||||| || ||||| |||||||| ||||| |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 179559 CTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAGACCTTACAATGCGATTGCTTT 179617 || | || ||||| ||||| ||| ||| | || | ||||||||||| ||||| || Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAGCTTC-GTCCTTACAATGCTATTGCATT 70 Query 179618 TTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTC 179677 || | || || || || ||||| ||| ||| | ||||||||| | ||||| || Sbjct 69 CTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCAGG 10 Query 179678 TTGGTTTTT 179686 ||||||||| Sbjct 9 TTGGTTTTT 1 >seq213 Length=407 Score = 131 bits (144), Expect = 2e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 178209 TTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCA 178268 ||||||||||| || |||||| |||||| |||||||| ||||| ||||| || | || Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 178269 GTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATC 178328 |||||| | |||| || |||||||||||||||| || |||| |||||||| ||||| Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 178329 TCTGGTACATTCAACTACAT 178348 || ||||| ||||||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 109 bits (120), Expect = 7e-19 Identities = 106/134 (79%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 178077 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 178136 || || || || |||||||| || ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 178137 CAACTCGTAGTATTTCACTTCCTCATTGGTATCT-ATGCATACATGGGACGTGAGTGGGA 178195 ||||| | || | |||||| || | || |||| ||| |||||||| ||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 178196 ACTTTCATACCGTT 178209 |||||| | ||||| Sbjct 212 ACTTTCTTTCCGTT 225 >seq4603 Length=650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 178351 TTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAG 178410 ||||||||||||| || |||||||| || |||||||| ||||||||| | ||||| || | Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 178411 GTGTATTCGGTGGTTCACTGTT 178432 |||| || ||||||||||| || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 177980 CGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGG 178039 |||||| ||||||||||| || ||||||| || | || |||||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 178040 TGCAGTTGTTCCATCTTCCAA 178060 |||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605830895344080