Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq3161 358 7e-94 seq1947 340 2e-88 seq12 215 6e-51 seq213 131 2e-25 seq4603 98.7 1e-15 seq2164 96.9 4e-15 seq53 84.2 2e-11 >seq3161 Length=578 Score = 358 bits (396), Expect = 7e-94 Identities = 318/398 (80%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 158959 TTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAA 159018 ||||||| || ||||| || | || ||||| || || | |||||||| ||||| | Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 159019 CAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCG 159078 || || ||| ||||||||||||||| |||||||||||||| || || || || | Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 159079 CAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTT 159138 | || || |||||||| |||||| | ||||||||||||||||||||||||||||| |||| Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 159139 CCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCG 159198 | | |||||||||||||||||||||||||| || || ||||||||||| || ||||| Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 159199 TGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTC 159258 | || ||||||||||||||||| ||||||||||||||||||||||| | |||| || Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTC 279 Query 159259 AGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAG 159318 | |||||||| | ||||| |||| || | | |||||||| || |||||||||| Sbjct 278 AAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAG 219 Query 159319 TTATGCATGAGCGTAACGCACACAACTTCCCACTCGAC 159356 | ||||| ||||||||||| |||||||||||||| ||| Sbjct 218 TAATGCACGAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 340 bits (376), Expect = 2e-88 Identities = 395/533 (74%), Gaps = 0/533 (0%) Strand=Plus/Minus Query 160359 TTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGAT 160418 |||| || || |||||| ||||| |||||||| | ||| | | ||| | ||||| | Sbjct 534 TTTTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGT 475 Query 160419 TTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAG 160478 | ||||||||||| |||||||| ||||| |||||||| || ||||| | |||||| | Sbjct 474 TCCACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTG 415 Query 160479 CACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAAC 160538 |||| || |||| || ||||||| || || |||||||| |||| |||||||||||| Sbjct 414 CACTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATG 355 Query 160539 AAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCA 160598 ||||| || || ||||| || | || |||| |||||||| || |||||||| | Sbjct 354 GTGCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAA 295 Query 160599 CTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTC 160658 |||||||||| |||||||| |||||||| || | || || ||||||||||| ||| | | Sbjct 294 CTGCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGC 235 Query 160659 ATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTG 160718 | || |||||| | ||||| || || | |||||||||| |||||| | | | Sbjct 234 ACTTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAG 175 Query 160719 GTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAG 160778 | || || || || | |||||||| || ||||| |||||||||| | |||||||||| Sbjct 174 GCCTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAG 115 Query 160779 ATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCAT 160838 | || ||||| || ||||||||||| || |||||| | |||| ||||| | || |||| Sbjct 114 ACCCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCAT 55 Query 160839 GGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTT 160891 || | || || ||||| || || || || || | ||||| || || ||| Sbjct 54 GGATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 215 bits (238), Expect = 6e-51 Identities = 308/433 (71%), Gaps = 8/433 (2%) Strand=Plus/Minus Query 159934 TTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGG 159993 ||| || || ||||| |||||||| | || ||| | || ||||||||||| | || Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGG 370 Query 159994 CGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTC 160053 || ||| |||| ||||| ||||||| ||| ||||| || || || | || ||||| Sbjct 369 TGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTC 310 Query 160054 CTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGG 160113 || || || ||| ||||| | ||||| |||| |||||||| || ||||| Sbjct 309 ATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGG 250 Query 160114 TCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCA 160173 ||||| | || | || ||||| || ||||||||||| || ||| | ||| ||| Sbjct 249 GCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCA 190 Query 160174 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCAT 160233 | | || || || |||| ||||| || || |||||||| ||||| |||||||| ||||| Sbjct 189 ATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCAT 130 Query 160234 GCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCTTACAATGCTATTG 160289 ||| ||||||||||| || ||||| || ||| | ||||||||||||||||||| Sbjct 129 GCTGCGTCAGTTTGAGCTTGCACG----CTCTGTAAAGCTTCGTCCTTACAATGCTATTG 74 Query 160290 CGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGT 160349 | ||||| | || || || || || || || ||| | ||||| || | || || | Sbjct 73 CATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAAT 14 Query 160350 CCAGTTGGTTTTT 160362 | |||||||||| Sbjct 13 CAGGTTGGTTTTT 1 >seq213 Length=407 Score = 131 bits (144), Expect = 2e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 158739 TTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCT 158798 ||||||||||| || |||||| |||||| || ||||||||||| || || || ||||| Sbjct 219 TTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 160 Query 158799 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 158858 |||||| || |||| || ||||||||||||| ||||| || | |||||| || || || Sbjct 159 GTATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATT 100 Query 158859 TCTGGTACTTTTAACTACAT 158878 || |||||||| |||| ||| Sbjct 99 TCGGGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 158881 TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTG 158940 |||| |||||||| || |||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 158941 GGGTATTCGGTGGATCTCTTTT 158962 | || || ||||| || ||||| Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq2164 Length=396 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 158607 TTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTC 158666 || || || || |||||||| || ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 158667 CAACTCGTAGTCTTTCACTTCCTTATCGGCATCT-ATGCATATATGGGACGTGAATGGGA 158725 ||||| | || | |||||| | | ||||||| ||| || ||||| ||||| ||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 158726 ACTTTCATACCG 158737 |||||| | ||| Sbjct 212 ACTTTCTTTCCG 223 >seq53 Length=414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 158510 CGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGG 158569 |||||| ||||||||||| || ||||||| || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 158570 TGCAGTTGTACCATCTTCCAA 158590 ||||||||| || |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552310682441280