Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq3161 352 3e-92 seq1947 342 6e-89 seq12 215 6e-51 seq213 134 2e-26 seq2164 116 5e-21 seq4603 98.7 1e-15 seq53 82.4 9e-11 >seq3161 Length=578 Score = 352 bits (390), Expect = 3e-92 Identities = 333/425 (78%), Gaps = 0/425 (0%) Strand=Plus/Minus Query 179441 TTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGA 179500 ||||||| || |||||||| | || ||||| || ||| | |||||||| ||||||| Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 179501 CAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCG 179560 || || ||| |||||| |||||||| ||||||||||| || || ||||| || | Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 179561 CAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCT 179620 | ||||| || ||||| |||||| | ||||||||||| || || || |||||||| || | Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 179621 CTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCG 179680 || | ||||||||||||||||| ||||| || || || |||||||||||||||||||| Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 179681 TGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTC 179740 | || |||||||| |||||||| ||||||||||||||||||||||| | ||||| || Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTC 279 Query 179741 AAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAG 179800 |||| ||||| | ||||| |||| ||| | | |||||||| | |||||||||| Sbjct 278 AAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAG 219 Query 179801 TTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTACAC 179860 | ||||| ||||||||||| |||||||||||||| ||| | || | | ||| || || Sbjct 218 TAATGCACGAGCGTAACGCTCACAACTTCCCACTAGACTTGGCATCAGTTGAAGCTCCAG 159 Query 179861 CTGTA 179865 ||||| Sbjct 158 CTGTA 154 >seq1947 Length=534 Score = 342 bits (378), Expect = 6e-89 Identities = 387/519 (75%), Gaps = 0/519 (0%) Strand=Plus/Minus Query 180495 TTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACC 180554 ||||| || || |||||||| | ||| | ||||| | || || |||||||||||||| Sbjct 520 TTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGACA 461 Query 180555 CTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCA 180614 || ||||| ||||| |||||||| || ||||| | |||| | ||| | || | ||| Sbjct 460 CTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGCA 401 Query 180615 ATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTT 180674 || ||||||| ||| || |||||||| |||| |||||||||||| |||||||| || Sbjct 400 ATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATTC 341 Query 180675 AAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTC 180734 || || || | || || | || || || ||||||||||| ||||||||||| ||| Sbjct 340 CGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTTC 281 Query 180735 TGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 180794 ||||| |||||||| || | ||||| ||||||||||| ||| | || || |||||| | Sbjct 280 TGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCTT 221 Query 180795 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAAC 180854 ||||| || || | ||||| |||| ||||||| | | || || || || ||| Sbjct 220 TTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAAC 161 Query 180855 CTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAG 180914 | |||||||| || ||||| ||||||||| | ||||||||||| ||||| ||||| Sbjct 160 TTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGAA 101 Query 180915 ACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCC 180974 || |||||||| || |||||| | ||||| ||||| | || |||||| |||| || Sbjct 100 ACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCAA 41 Query 180975 GATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTT 181013 || || ||||||||||| | | |||||||| || ||| Sbjct 40 GACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 215 bits (238), Expect = 6e-51 Identities = 308/430 (72%), Gaps = 4/430 (1%) Strand=Plus/Minus Query 180057 TTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTTGCCATTGGC 180116 ||||| || || || |||||||| | |||||| | || |||||||||||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 180117 GGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCC 180176 || ||| |||| || || |||| || || ||||||||| ||||| | || ||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 180177 TATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGT 180236 || || |||||| ||||| | || ||||| || || || || || || ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 180237 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAA 180296 ||||| | || | || ||||| || ||| |||| || | ||| ||| ||||||||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 180297 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATG 180356 | || || || |||| || || ||||| || ||||| ||||| |||||||| || ||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 180357 CTACGCCAGTTTGAACTGGCACG-TCT-TATTGGTATCCGTCCTTACAATGCTATTGCAT 180414 || || |||||||| || ||||| ||| || | | |||||||||||||||||||||| Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCTGTAAAG--CTTCGTCCTTACAATGCTATTGCAT 71 Query 180415 TCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCA 180474 |||| | || ||||| || || || || || | ||||| || || || || || Sbjct 70 TCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCAG 11 Query 180475 GTTGGTTCTT 180484 ||||||| || Sbjct 10 GTTGGTTTTT 1 >seq213 Length=407 Score = 134 bits (148), Expect = 2e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 179222 TAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAG 179281 ||||||||||||| |||||| ||| || |||||||||||||| || ||||| | ||| | Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 179282 TATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCT 179341 ||||| || |||| || ||||||||||||| ||||| || | |||||| || || || | Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 179342 CTGGTACTTTTAACTACAT 179360 | |||||||| |||| ||| Sbjct 98 CGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 116 bits (128), Expect = 5e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 179089 TTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTC 179148 || ||||| || |||||||| || ||||| || || ||||| || ||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 179149 CAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAA 179208 ||||| | || | ||||||| | | ||||||| ||| ||||| |||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 179209 CTTTCTTACCGT 179220 ||||||| |||| Sbjct 213 CTTTCTTTCCGT 224 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 179363 TTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTG 179422 |||| |||||||| || |||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 179423 GGGTATTCGGTGGATCTCTTTT 179444 | || || ||||| || ||||| Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 178993 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGT 179052 ||||| ||||||||||| || ||||||| || | || || |||||||||||||||||| Sbjct 80 GACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGGT 21 Query 179053 GCTGTTGTCCCAAGTTCAAA 179072 || ||||| || | |||||| Sbjct 20 GCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610149621430080