Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq22882 122 1e-22 seq22413 89.7 6e-13 >seq22882 Length=217 Score = 122 bits (134), Expect = 1e-22 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGG-AGCATCATTTGCACAACGTCTCAT 59989 || ||||| ||||| || |||||| | ||| |||| | ||||| | || || | Sbjct 3 AAGGCAGAGTGGGCTCAGCGGTGGATCGGCAGTGGCAGCAGC-TTTGCCGAGCGGCTGGT 61 Query 59990 AGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| |||||||| || ||| ||| |||||| ||||| ||||| |||||||| Sbjct 62 TGCATTTGCGTGCGTGGAGGGCATCCACTTTAGTGGCTCCTTCTGCGCTATCTTCTGGCT 121 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||||| ||||||||||| || | |||||||||||||| || ||||| ||||| Sbjct 122 GAAGAAGCGGCTGCTCATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGA 181 Query 60110 GGGCCTCCA 60118 |||||| || Sbjct 182 GGGCCTTCA 190 >seq22413 Length=220 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 |||||||| || |||||||||||||||| ||||| | ||||| |||||||| ||||| Sbjct 1 TTCTGGCTGAAGAAGCGTGGCCTCATGCACGGCCTCACCTTCTCAAACGAGCTCATTTCG 60 Query 60102 CGGGACGAGGGCCTCCA 60118 |||||||| |||||||| Sbjct 61 CGGGACGAAGGCCTCCA 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548363046893040