Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq3161 352 3e-92 seq213 129 7e-25 seq4603 95.1 1e-14 seq2164 82.4 9e-11 >seq3161 Length=578 Score = 352 bits (390), Expect = 3e-92 Identities = 319/399 (80%), Gaps = 2/399 (1%) Strand=Plus/Minus Query 176693 TTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAA 176752 ||||||||||||||||||| | || ||||| || ||| | | || || || || | Sbjct 578 TTTTCTCAGCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGA 519 Query 176753 ACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAG 176812 ||||||| ||| |||||||| ||||| ||||||||||| || ||||||||||| | Sbjct 518 ACGAATCTGCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTG 459 Query 176813 CTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAA 176872 ||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| | Sbjct 458 CTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTT 399 Query 176873 GTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTG 176932 |||||||||||||||||| |||| || || ||| | |||||||| ||||| | ||| Sbjct 398 CTCTTCACTTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTA 339 Query 176933 TTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACT 176992 | | || ||||||||||||||||||||||||||||||||||||||||| | ||| || Sbjct 338 TCTCTACCATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGAC-TCT 280 Query 176993 C-TGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAA 177051 | ||| || || || ||||| || ||| | |||||||| ||||| ||||||||| Sbjct 279 CAAGGTCGTGTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAA 220 Query 177052 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGAC 177090 || |||||||||||||| ||||||||||||||||| ||| Sbjct 219 GTAATGCACGAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq213 Length=407 Score = 129 bits (142), Expect = 7e-25 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 176474 TAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAG 176533 |||| ||||||||||||||| ||| || |||||||||||||| | || || | || | Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 176534 TTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTT 176593 | ||| || |||| ||| |||||||||| || ||||| || |||||||| || ||||||| Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 176594 CAGGTACATTCAACTTTAT 176612 | ||||| |||||||| || Sbjct 98 CGGGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 176615 TTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAG 176674 |||| |||||||| ||||||||||| || |||||||| ||||| ||||| || || || | Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 176675 GTGTGTTTGGTGGATCTCTTTT 176696 ||||||||||||| || ||||| Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq2164 Length=396 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 176341 TTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATAC 176400 || ||||| || |||||||| || || | ||||||||||| ||||| || || || ||| Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 176401 CAACTCGTTGTATTCCACTTCCTTATCGGTATCT-CAGCTTACATGGGACGCCAATGGGA 176459 ||||| | || | ||||||| | | || |||| | || |||||||| || | ||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 176460 ACTT 176463 |||| Sbjct 212 ACTT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603316437045120