Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2853 109 1e-18 seq1716 109 1e-18 seq3995 91.5 4e-13 seq4408 89.7 1e-12 >seq2853 Length=425 Score = 109 bits (120), Expect = 1e-18 Identities = 109/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || |||| ||||||| |||| ||||| | || ||||||||||||| |||||| || Sbjct 33 ATGTCAAGGGCTGGTAAGGTTCTGCGCGTTGTTTCGAATTAAACCACATGTTCCACCACT 92 Query 7785 TATACAATCTTCCGTC-AGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG 7843 | || | | ||||| | || |||||||||||| |||||||| ||| | |||||| || Sbjct 93 TGTATGAGCCCCCGTCTATTTCCTTTGAGTTTTAGCCTTGCGGCTGTACTCCTCAGGCGG 152 Query 7844 AATATTT-ACGCGTTAGCT 7861 | |||| ||||||||||| Sbjct 153 AGAATTTAACGCGTTAGCT 171 >seq1716 Length=1290 Score = 109 bits (120), Expect = 1e-18 Identities = 101/127 (80%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 480 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 421 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGC 7854 |||||| || |||||||||| | |||||||| | || | | |||| || ||| ||| ||| Sbjct 420 CCGTCAATTCCTTTGAGTTTCACCCTTGCGGGCATACTCCCCAGGCGGGATACTTAGCGC 361 Query 7855 GTTAGCT 7861 ||||||| Sbjct 360 GTTAGCT 354 >seq3995 Length=701 Score = 91.5 bits (100), Expect = 4e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||| || || |||||||||||||| ||||| ||||||||||| || ||| Sbjct 471 AAGATTTGCCCATCGGTGATCGAGATAACATTTGTTGGGATGTAAGCAGAAACGTCGCCT 412 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 |||||||||| || | || || || || | ||||||||| || || Sbjct 411 TCTTGTGTTTCTACGATCGGCAATGCCGTCATGCTTCCACCACCTAATTT 362 >seq4408 Length=1083 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCA-AGTCTTCTAAAAGGGCAG 6825 |||||| |||||| |||||| ||||||||| | |||||||| | ||| | | ||||| Sbjct 256 TGAGAGGATGATCGGCCACACTGGGACTGAGACACGGCCCAGACGCTT-TCGAGCGGCAG 198 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 ||||| |||| || |||||||||||||||||||||| || Sbjct 197 CAGTGAGGAATCTTGGACAATGGGCGAAAGCTTGATCCAG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192170745892154