Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq3161 379 3e-100 seq1947 315 9e-81 seq12 208 9e-49 seq2164 131 2e-25 seq4603 104 3e-17 seq1029 102 1e-16 seq213 87.8 2e-12 seq53 84.2 3e-11 >seq3161 Length=578 Score = 379 bits (420), Expect = 3e-100 Identities = 318/390 (82%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 183784 GCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCA 183843 |||||||||||||| |||| ||||| || || | |||||||| |||||| || || Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 183844 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCAT 183903 ||| ||||||||||||||||||||||||||| || ||||||||||| ||||| || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 183904 GGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCAC 183963 || |||||||||||||| |||||||| || ||||| || ||||| ||||||||||||||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 183964 TTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACT 184023 |||||||||||||| ||||| || || || |||||||| |||||||||||| | || Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 184024 ATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGT 184083 |||||||| ||||| || ||||| |||||||||||||| | |||| |||||||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 184084 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 184143 || | ||||| |||| ||| | ||||||||||| || || |||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 184144 GAGCGTAATGCTCACAACTTCCCTCTCGAC 184173 |||||||| |||||||||||||| || ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 315 bits (348), Expect = 9e-81 Identities = 381/519 (73%), Gaps = 0/519 (0%) Strand=Plus/Minus Query 186434 CTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGAC 186493 |||||| || || |||||||| | ||| | | ||| ||||||| |||||||||||||| Sbjct 521 CTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGAC 462 Query 186494 GTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGC 186553 | || || ||||||||||||||||| || || | | || | ||| || || | || Sbjct 461 ACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGC 402 Query 186554 AATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATT 186613 ||| ||||| | || || || || || || | ||||||||| || ||||||||||| Sbjct 401 AATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATT 342 Query 186614 CAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATT 186673 | || ||| || | || || | ||||| ||||| || ||||| ||||| ||| | || Sbjct 341 CCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTT 282 Query 186674 CTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCT 186733 ||||||||||||||| ||| | || || || ||||||||| | || ||||||||||| Sbjct 281 CTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCT 222 Query 186734 CTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAA 186793 |||||||| || | |||||||||| | | ||||| | | || || || || || Sbjct 221 TTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAA 162 Query 186794 CCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGA 186853 | | |||||||||||||| || ||| ||| | | |||||||| || ||||| ||||| Sbjct 161 CTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGA 102 Query 186854 GACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGT 186913 || ||||| || || || ||| | ||||| |||||| | || || |||||||| | Sbjct 101 AACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCA 42 Query 186914 GGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGT 186952 || || ||||| ||||| ||||||| ||||| || || Sbjct 41 AGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 208 bits (230), Expect = 9e-49 Identities = 298/417 (71%), Gaps = 2/417 (0%) Strand=Plus/Minus Query 185997 TTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGT 186056 ||||| || || || |||||||| || || ||||| || |||||| | || | ||| Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 186057 GGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCT 186116 |||||| |||| || || || || || || ||||| || ||||| || || ||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 186117 TACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGT 186176 ||||| || ||| || || | || ||||||||||||||||| || || ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 186177 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAA 186236 ||||| | || | || ||||| || ||| |||||||||| ||| || |||| |||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 186237 CTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATG 186296 | || || || |||| ||||| || || || || || || ||||| || || |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 186297 CTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTT 186355 ||||| |||||||| | || ||| ||| | ||||| |||||||| ||||| || Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCT-GTAAAGCTTCGTCCTTACAATGCTATTGCATT 70 Query 186356 TTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTC 186412 || | || ||||| || || ||| ||| ||| | ||||| ||||| ||||| || Sbjct 69 CTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATC 13 >seq2164 Length=396 Score = 131 bits (144), Expect = 2e-25 Identities = 108/132 (82%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 183424 TTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTAC 183483 || || || || |||||||| || ||||| || || ||||| || ||||||||||||||| Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 183484 CAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAA 183543 ||||| | || | ||||||| || | ||| ||| ||||||||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGCTACATGGGTCGTGAGTGGGAA 212 Query 183544 TTGTCTTACCGT 183555 | |||| |||| Sbjct 213 CTTTCTTTCCGT 224 >seq4603 Length=650 Score = 104 bits (114), Expect = 3e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 183698 TTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTG 183757 |||| |||||||| |||||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 183758 GTGTCTTCGGTGGTTCTCTGTT 183779 |||| || |||||||| || || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq1029 Length=1000 Score = 102 bits (112), Expect = 1e-16 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| |||||| |||| |||||| | |||||||| || | ||||||||||| || Sbjct 650 CTTCTGTGAATGGGTTACAAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCT 591 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 ||||| || ||||| ||| | ||||| |||| ||||| |||| || || ||||||| Sbjct 590 AATGATCCCTACTCTTTTGACTGCAACT-TCTGTATTCATTATTGCATTTGTTGCTGCTC 532 Query 183314 CTCCTGTGGACAT 183326 ||||||| ||||| Sbjct 531 CTCCTGTAGACAT 519 >seq213 Length=407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 183559 GGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTC 183618 |||||||||||||||||| ||| ||||| ||||| ||||| ||||| || ||||| Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 183619 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 ||| | |||| || ||||||||||||| || || |||||||| || || || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCAT 101 >seq53 Length=414 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 183327 CGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGG 183386 |||||| ||||| ||||| || |||| || || | || || ||||||||||||||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 183387 TGCAGTTGTTCCTTCTTCCAA 183407 ||||||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621886959214920