Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq3161 383 2e-101 seq1947 349 4e-91 seq12 260 2e-64 seq2164 125 8e-24 seq213 104 3e-17 seq4603 91.5 2e-13 >seq3161 Length=578 Score = 383 bits (424), Expect = 2e-101 Identities = 319/390 (82%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 164516 GCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCC 164575 |||||||||||||| |||| ||||| || || | ||||| || || || || || || Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 164576 CAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCAC 164635 ||| |||||||||||| ||||| ||||||||||| |||||||| ||||| || ||| Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 164636 GGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCAC 164695 ||||||||||||||||| || |||||||||||||| ||||||||||| ||||| || ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 164696 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACC 164755 |||||||| || ||||||||||| || ||||||||||| |||||||| || | ||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 164756 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 164815 |||||||||||||| ||||||||||||||||||||||| | | || ||| |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 164816 GTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCAC 164875 || ||||||| |||| ||| | ||||||||||| || || |||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 164876 GAGCGTAATGCTCACAACTTCCCTCTCGAC 164905 |||||||| |||||||||||||| || ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 349 bits (386), Expect = 4e-91 Identities = 388/518 (75%), Gaps = 0/518 (0%) Strand=Plus/Minus Query 165627 TTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACG 165686 || || || || ||||||||||| ||| | |||||| ||||||||||||| |||||||| Sbjct 520 TTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGACA 461 Query 165687 CTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCC 165746 || || || || ||||||||||| || || || | ||||| | ||| | |||| ||| Sbjct 460 CTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGCA 401 Query 165747 ATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTC 165806 |||||||| | ||||| ||||| || ||| ||||||||| || |||||||| ||| Sbjct 400 ATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATTC 341 Query 165807 AAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTC 165866 || || || |||||||| || || || || || ||||| ||||| ||||||||| Sbjct 340 CGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTTC 281 Query 165867 TGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTC 165926 ||||| ||||| ||||| | || ||| || ||||||||| | |||||||| ||||| Sbjct 280 TGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCTT 221 Query 165927 TTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAAT 165986 |||||||| || | || ||||||| ||| |||||||| || | || || || || || Sbjct 220 TTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAAC 161 Query 165987 CTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAA 166046 | ||||||||||| || || ||||| |||||| | || || || || || || || ||| Sbjct 160 TTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGAA 101 Query 166047 ACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTA 166106 || ||||| || ||||||||| | | || ||||| | || || ||| |||| || | Sbjct 100 ACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCAA 41 Query 166107 GACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGT 166144 ||||| || || || || |||| |||||||| || || Sbjct 40 GACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 260 bits (288), Expect = 2e-64 Identities = 313/422 (74%), Gaps = 10/422 (2%) Strand=Plus/Minus Query 165188 TTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGG 165247 ||| || || ||||| |||||||| | || ||||| || ||||||||||| ||||| Sbjct 429 TTTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGC-CTTGG 371 Query 165248 G-GGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTT 165306 | || ||| |||| || || |||||||| || |||||| || ||||| | || |||| Sbjct 370 GTGGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTT 311 Query 165307 CCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGG 165366 | || || || ||| ||||| | || || ||||| || ||||||||| || |||| Sbjct 310 CATACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGG 251 Query 165367 GTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCC 165426 | ||||| | || | |||||||| || ||| ||||||| ||||||| || ||||||| Sbjct 250 GGCATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCC 191 Query 165427 AACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCA 165486 || | || || || ||||| ||||| || || || || || || || || || || |||| Sbjct 190 AATTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCA 131 Query 165487 TGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA----TTCGTCCTTACAATGCTATT 165542 |||| || |||||||| || ||||| || ||| |||||||||||||||||||| Sbjct 130 TGCTGCGTCAGTTTGAGCTTGCACG----CTCTGTAAAGCTTCGTCCTTACAATGCTATT 75 Query 165543 GCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAA 165602 || ||||| | || || || || |||||| ||| || | || |||||||| |||||| Sbjct 74 GCATTCTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAA 15 Query 165603 TC 165604 || Sbjct 14 TC 13 >seq2164 Length=396 Score = 125 bits (138), Expect = 8e-24 Identities = 109/133 (82%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 164156 TTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTC 164215 || ||||| || |||||||| || || ||||||||||| |||||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 164216 CAACTCGTTGTGTTCCACTTCCTGATTGGCATCT-ATGCTTACATGGGTCGTGAGTGGGA 164274 ||||| | || | ||||||| | | ||||||| ||| |||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 164275 ACTTTCTTACCGT 164287 |||||||| |||| Sbjct 212 ACTTTCTTTCCGT 224 >seq213 Length=407 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 164291 GGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTG 164350 ||||||||||||||||| ||||| |||||||| || || || || || | ||| || Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 164351 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCT 164410 ||| | |||| || ||||||||||||| ||||| || | ||||| || ||||| || Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 164411 GGAACCTTCAACTACAT 164427 || || ||||||| ||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 164432 GTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGT 164491 || ||||| ||||||||||||||||| |||||||| ||||| ||||| || || || ||| Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 164492 GTGTTTGGCGGTTCTCTGTT 164511 |||||||| ||||| || || Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557489954688120