Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3161 383 2e-101 seq1947 349 4e-91 seq12 205 1e-47 seq213 116 4e-21 seq2164 109 7e-19 seq4603 98.7 1e-15 seq53 87.8 2e-12 >seq3161 Length=578 Score = 383 bits (424), Expect = 2e-101 Identities = 319/390 (82%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 178186 GCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGT 178245 || ||||||||||| |||| ||||| || || | |||||||| || ||||||||| | Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 178246 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCAT 178305 ||| ||||||||||||||||||||||||||| || |||||||| |||||||| || Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 178306 GGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCAC 178365 |||||||| ||||| || |||||||||||||| || ||||||||||| ||||| || ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 178366 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 178425 |||||||| || ||||||||||| || |||||||||||||||||||||||| | ||| Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 178426 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAA 178485 |||||||||||||| ||||||||||||||||||||||| | | || ||| || Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 178486 GTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCAC 178545 || | ||||| |||| ||| | ||||||||||| || ||||||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 178546 GAGCGTAATGCTCACAACTTCCCTCTTGAC 178575 |||||||| |||||||||||||| || ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 349 bits (386), Expect = 4e-91 Identities = 388/518 (75%), Gaps = 0/518 (0%) Strand=Plus/Minus Query 179313 TTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACG 179372 ||||| || || || || ||||| ||| | |||||| | || || |||||||||||||| Sbjct 520 TTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTCCACAACTGGACA 461 Query 179373 CTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCC 179432 || ||||| ||||||||||||||||| || || | | || | ||| | |||||||| Sbjct 460 CTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCACTTCTTTGTGCA 401 Query 179433 ATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTC 179492 |||||||| || ||||| |||||||| || |||||||| | || |||| |||||| Sbjct 400 ATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGTGCAAACACATTC 341 Query 179493 AAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTC 179552 || ||| | ||||| || | || |||||||| || ||||| ||||| ||||||||| Sbjct 340 CGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACTGCAAACCGTTTC 281 Query 179553 TGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTG 179612 ||||| ||||||||||| | || ||| || ||||||||| | || ||||| ||| | Sbjct 280 TGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCACTTCTTCATGCTT 221 Query 179613 TTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAAC 179672 |||||||| || | |||||||||| | |||||| | | || || || || ||| Sbjct 220 TTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGCCTAGCGCTAAAC 161 Query 179673 CTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAG 179732 | | ||||||||||| ||||| |||||||| | || ||||| || ||||| ||||| Sbjct 160 TTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGACCCTGAATTCGAA 101 Query 179733 ACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTC 179792 || ||||| || || |||||| | ||||| |||||| | || || |||||||| | Sbjct 100 ACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGGATGGCGGCTCAA 41 Query 179793 GATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGT 179830 || || ||||| ||||| ||||||| ||||| || || Sbjct 40 GACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGT 3 >seq12 Length=429 Score = 205 bits (226), Expect = 1e-47 Identities = 297/417 (71%), Gaps = 2/417 (0%) Strand=Plus/Minus Query 178875 TTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGC 178934 || || || ||||||||||| || | || || |||||| ||||| | || |||| Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 178935 GGTTGGCTCACGGGCACAACATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCG 178994 || ||| | || || || || ||||| || || ||||| || ||||| | || ||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 178995 TATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGA 179054 || || || || || || ||| | || || || || |||||||| || || | || Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 179055 CATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAA 179114 ||||| | || | |||||||| ||||| ||||| ||||| ||| || ||| |||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 179115 CTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATG 179174 | || || || ||| | ||||| || || || ||||| |||||||| || || |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 179175 CTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTT 179233 || || |||||||| | ||||| ||| || |||||||||||||||| || || || Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCT-GTAAAGCTTCGTCCTTACAATGCTATTGCATT 70 Query 179234 TTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTC 179290 || | ||||| || || || || ||||| || | || |||||||| ||||| || Sbjct 69 CTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATC 13 >seq213 Length=407 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 177959 TAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTG 178018 ||||||||||||| |||||| |||||| |||||||| ||||| || || || |||||| Sbjct 218 TAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTG 159 Query 178019 TATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCA 178078 ||||| | | || || ||||||||||||| ||||| |||| |||||| || || || Sbjct 158 TATTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTT 99 Query 178079 GTGGCACCTTCAACTACAT 178097 || || ||||||| ||| Sbjct 98 CGGGTACTTTCAACTTCAT 80 >seq2164 Length=396 Score = 109 bits (120), Expect = 7e-19 Identities = 105/132 (80%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 177826 TTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTC 177885 || || || || |||||||| ||||| || || || ||||| ||||| |||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 177886 CAACTCGTTATCTTCCACTTCCTGATCGGTATCTA-TGCATACATGGGTCGTGAGTGGGA 177944 ||||| | | | ||||||| | | || |||| ||| |||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 177945 ACTTTCTTACCG 177956 |||||||| ||| Sbjct 212 ACTTTCTTTCCG 223 >seq4603 Length=650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 178100 TTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTG 178159 |||| |||||||| |||||||||||||| |||||||| ||||||||| | || || |||| Sbjct 82 TTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTG 23 Query 178160 GTGTCTTTGGTGGTTCTCTGTT 178181 |||| ||||||||||| || || Sbjct 22 GTGTGTTTGGTGGTTCACTTTT 1 >seq53 Length=414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 177729 CGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGG 177788 |||||| ||||||||||| || ||||||| || | || |||||||||||||| ||||| Sbjct 81 CGACGGTATCCGTGAACCAGTATCTGGTTCTCTACTTTACGGCAACAACATCATCTCTGG 22 Query 177789 TGCTGTTGTTCCTTCTTCTAA 177809 ||| ||||||||| |||| || Sbjct 21 TGCAGTTGTTCCTACTTCAAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596131356460560