Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq3161 398 9e-106 seq1947 372 4e-98 seq12 226 3e-54 seq213 107 2e-18 seq4603 104 3e-17 seq2164 98.7 1e-15 >seq3161 Length=578 Score = 398 bits (440), Expect = 9e-106 Identities = 322/390 (83%), Gaps = 0/390 (0%) Strand=Plus/Minus Query 169940 GCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCC 169999 || ||||||||| | || ||||| |||| |||||||||| || |||||||| || Sbjct 570 GCAATGCACGGTTCATTGGTAACTTCATCTCTTATCCGTGAAACTACTGAGAACGAATCT 511 Query 170000 CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCAC 170059 ||| ||||||||||||||||||||||||||| || |||||||| ||||| || ||| Sbjct 510 GCTAACGCTGGTTACAAGTTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 451 Query 170060 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCAC 170119 |||||||| ||||| || ||||||||||||||||| ||||||||||| ||||| || ||| Sbjct 450 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCTCTTCAC 391 Query 170120 TTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACG 170179 |||||||| || ||||||||||| ||||| ||||||||||| ||||||||| |||| || Sbjct 390 TTCTTCCTTGCTGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTATCTCTACC 331 Query 170180 ATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 170239 ||||| |||||||| ||||||||||||||||||||||| | | || ||| |||||| Sbjct 330 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTTGACTCTCAAGGTCGT 271 Query 170240 GTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 170299 || ||||||| |||| ||| | ||||||||||| || || |||||||| |||||| Sbjct 270 GTAATCAACACTTGGGGTGACATCATCAACCGTGCTAACCTAGGTATGGAAGTAATGCAC 211 Query 170300 GAGCGTAATGCTCACAACTTCCCTCTCGAC 170329 |||||||| |||||||||||||| || ||| Sbjct 210 GAGCGTAACGCTCACAACTTCCCACTAGAC 181 >seq1947 Length=534 Score = 372 bits (412), Expect = 4e-98 Identities = 401/531 (76%), Gaps = 0/531 (0%) Strand=Plus/Minus Query 171057 TTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTC 171116 || |||||| |||||| || || ||||||||||| ||| | |||||| | ||||| ||| Sbjct 532 TTTGCACCTAGCTTTGGTGTGGCTGCAATCTTCCGTTTCATCCTCTTCTTCCAAGGGTTC 473 Query 171117 CACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCA 171176 |||||||||||||| || || || || ||||||||||| || || | | || | |||| Sbjct 472 CACAACTGGACACTTAACCCTTTCCACATGATGGGTGTGGCTGGCGTGTTAGGAGCTGCA 413 Query 171177 TTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAA 171236 | |||| |||||||||||| | ||||| ||||| || ||| ||||||||| ||| Sbjct 412 CTTCTTTGTGCAATTCATGGCGCAACAGTTGAGAACACGCTGTTTGAAGATGGAGATGGT 353 Query 171237 GCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACT 171296 |||||||| || || || | | ||||||| |||||||| || |||||||| ||| Sbjct 352 GCAAACACATTCCGTGCGTTCAATCCTACTCAGGCTGAAGAGACCTACTCTATGGTAACT 293 Query 171297 GCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCAT 171356 || || ||||||||||| ||||| ||||| | || ||| || |||||||||||||| Sbjct 292 GCAAACCGTTTCTGGTCACAGATCTTTGGAGTAGCATTCTCTAACAAGCGTTGGTTGCAC 233 Query 171357 TTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGT 171416 ||||| ||||| |||||||| || | ||||||||| | ||| | | || | | || Sbjct 232 TTCTTCATGCTTTTTGTTCCGGTAACCGGTCTTTGGATGAGTGCTATTGGTGTCTTAGGC 173 Query 171417 CTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGAT 171476 || || || || | | |||||||| ||||| ||| ||| | | ||||||||||| Sbjct 172 CTAGCGCTAAACTTGCGTGCTTATGACTTCGTTTCTCAAGAGATTCGCGCAGCAGAAGAC 113 Query 171477 CCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGG 171536 || || ||||| || ||||| || || |||||| | ||||| |||||| |||| |||||| Sbjct 112 CCTGAATTCGAAACCTTCTACACAAAAAACATCTTGTTGAACGAAGGTATTCGAGCATGG 53 Query 171537 ATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTT 171587 ||||| | |||||| ||||| ||||| |||| ||||| ||||| ||| Sbjct 52 ATGGCGGCTCAAGACCAGCCACACGAAAAACTTGTATTCCCTGAGGAGGTT 2 >seq12 Length=429 Score = 226 bits (250), Expect = 3e-54 Identities = 309/429 (72%), Gaps = 2/429 (0%) Strand=Plus/Minus Query 170631 TTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGC 170690 ||||| || || || |||||||| | || ||||| || ||||||||||| | || Sbjct 428 TTTGTGTTCGTTGGTTGGTCTGGCTTGCTACTTTTCCCTTGCGCTTATCTTGCCTTGGGT 369 Query 170691 GGCTGGCTTACGGGCACGACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCG 170750 |||||| |||| || || || || || ||| ||||||||| ||||| | |||||||| Sbjct 368 GGCTGGTTTACAGGAACCACTTTCGTAACATCTTGGTACACGCACGGCTTAGCAAGTTCA 309 Query 170751 TACCTTGAAGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGT 170810 ||||| |||||| || ||| | ||||| || |||||||| || || | ||||| Sbjct 308 TACCTAGAAGGTTGCAACTTCTTAACAGCAGCAGTGTCAACTCCAGCAAACAGCATGGGG 249 Query 170811 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAA 170870 ||||| | || | || ||||| || ||| |||| || || ||| ||| |||| ||| Sbjct 248 CATTCATTGCTCTTCCTATGGGGCCCAGAGGCTCAAGGAGACTTCACACGATGGTGCCAA 189 Query 170871 CTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATG 170930 | || || || |||| ||||| || || || || || || ||||| || || |||||| Sbjct 188 TTGGGTGGTCTTTGGACCTTTGTAGCTCTTCATGGTGCTTTCGCTCTAATTGGGTTCATG 129 Query 170931 CTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGATTAGACCGTACAATGCAATCGCTTT 170989 || || |||||||| | || ||| ||| | || | || |||||||| || || || Sbjct 128 CTGCGTCAGTTTGAGCTTGCACGCTCT-GTAAAGCTTCGTCCTTACAATGCTATTGCATT 70 Query 170990 CTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAG 171049 ||| | || ||||| ||||| || |||||| | ||||||||||| || || ||| | Sbjct 69 CTCAGCACCAATCGCAGTGTTCGTTTCTGTGTTCTTGATCTATCCTCTAGGACAATCAGG 10 Query 171050 TTGGTTCTT 171058 |||||| || Sbjct 9 TTGGTTTTT 1 >seq213 Length=407 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 169715 GGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTT 169774 |||||||| ||||||||| ||| ||||||||||| || ||||| || || | ||||| Sbjct 216 GGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTA 157 Query 169775 TTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCG 169834 ||| | ||||||| | || ||||| || ||||| |||| |||||| || || || ||| Sbjct 156 TTCATCATCTACCCAATCGGTCAAGGTTCATTCTCAGACGGTATGCCACTAGGCATTTCG 97 Query 169835 GGAACCTTTAACTACAT 169851 || || || |||| ||| Sbjct 96 GGTACTTTCAACTTCAT 80 >seq4603 Length=650 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 169856 GTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGA 169915 || ||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || Sbjct 80 GTTTTCCAAGCTGAGCACAACATCCTTATGCACCCTTTCCACATGCTAGGTGTTGCTGGT 21 Query 169916 GTGTTTGGTGGGTCTCTGTT 169935 ||||||||||| || || || Sbjct 20 GTGTTTGGTGGTTCACTTTT 1 >seq2164 Length=396 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 169580 TTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTC 169639 || || || || |||||||| || || || |||||| | |||||||||||||||| | Sbjct 93 TTTTACCCTATTTGGGAAGCTGCTTCACTAGACGAATGGCTTTACAACGGTGGTCCTTAC 152 Query 169640 CAACTGGTTGTCTTCCACTTCCTCATCGGCATCT-ATGCTTACATGGGTCGTGAGTGGGA 169698 ||||| | || | ||||||| || | ||||||| ||| |||||||||||||||||||| Sbjct 153 CAACTAATCGTTTGCCACTTCTTCCTAGGCATCTGCTGC-TACATGGGTCGTGAGTGGGA 211 Query 169699 A 169699 | Sbjct 212 A 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592023768094320