Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6527 138 2e-27 seq6394 89.7 1e-12 seq2139 87.8 4e-12 seq11470 86.0 1e-11 >seq6527 Length=17209 Score = 138 bits (152), Expect = 2e-27 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 319009 GCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGG 319068 ||||||||||| ||||| |||| || |||||| |||| || || | ||| ||||||||| Sbjct 14592 GCATAACGCCACTGGATGTACTCATTAGGTGTCTTGTCCAGGTGCTGCTCAATGTGGTGG 14533 Query 319069 AAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATG 319128 ||||||||||| |||||||| |||| ||| | || || |||||||| || |||| Sbjct 14532 AAAGCATGCTGAGCCACGTACGCAATACGTAGGTTGGGGTGCTTCCAGACTGTACCCTCA 14473 Query 319129 GTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTT 319184 ||||| || | | ||| ||||||||||| || |||||| || || ||||| || Sbjct 14472 GTGGCCTCAGTCTCTCCAGTGAGCACCTTGATCAGGGTGGACTTGCCGGCACCATT 14417 Score = 111 bits (122), Expect = 3e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 319818 ATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGGCC 319877 |||||| |||||||| |||| || |||| |||| ||||| || || | ||| || Sbjct 12984 ATCGTGCTCCACGTAGACAGTGCGCAGCTCATCTGCAGGAGGGAAGCCATCCACCTGACC 12925 Query 319878 GTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTA 319937 || ||||||| | |||||| || || || ||| | || || || ||||||||||| || Sbjct 12924 ATTGGCAATAGCTCTCATCAGAGTGGACTTTCCCACACCATTGGGACCACACAGACCATA 12865 Query 319938 GCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGC 319997 ||| || || || | ||| | | ||||||||| ||||| || ||||||| || Sbjct 12864 GCGATTGCCACGGATGAGGCGCATGGTGGCGTTGTTCAGCAGAATCTTGGCACCATAAGC 12805 Query 319998 CAGAGAAAATTCACAATCACACAGATCCTCACCGACTTC 320036 ||||| || ||||| | || || || ||||| |||| Sbjct 12804 AAGAGAGAACTCACAGTTGCAGAGTTCTTCACCTTCTTC 12766 >seq6394 Length=20407 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165703 AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762 ||||| ||||| |||||||||||||||||||| || || |||| || ||||||||||| Sbjct 13158 AACGCAGGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGG 13217 Query 165763 TTCGAGCCCCAC 165774 |||||||||||| Sbjct 13218 TTCGAGCCCCAC 13229 >seq2139 Length=4416 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||| |||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 4157 CTGGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 4098 Query 165767 AGCCCCAC 165774 |||||||| Sbjct 4097 AGCCCCAC 4090 >seq11470 Length=8557 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 ||| | |||||||| | ||| ||||||| || |||||| | ||||| |||||| | Sbjct 3028 CTTGTAGGCATGAATGGTGACCTTATGGCGCACTACATCAGGTATGTAGCAGACCGCCTG 2969 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 ||||||| || || ||| | || |||| ||| | |||||||||| | |||||| Sbjct 2968 CTTGTTGCGCTGGGCTACAACAAGCTGTATAACAGCACCAACCCCTTTGACTGGATGGAG 2909 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 ||||| || || || ||| | |||||||| || | | || | || || |||| | Sbjct 2908 CTCATCAGTCTACAGGGCAAGGCAAACTTCTTTGAGCGGAGAGTGGGCGAGTACCAGAAG 2849 Query 230626 CCTGGTGTGATG 230637 | ||||| ||| Sbjct 2848 GCCGGTGTTATG 2837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057604096571750