Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq334 145 8e-30 seq14182 136 4e-27 seq9159 132 5e-26 seq11472 104 2e-17 seq7244 98.7 1e-15 >seq334 Length=28022 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| |||||||| | || || || || | Sbjct 27643 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCAGC 27702 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||||| || |||| ||||| ||||| |||||| | |||||| Sbjct 27703 GATACCATTGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 27762 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 27763 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 27822 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || ||||| ||||||||| || | || ||| Sbjct 27823 ATCCAGAAGGAGTCCACACTTCATCTGGTGTTGCGCCTGCGCGGTGGC 27870 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | ||||||||||| || |||| ||| ||||| |||||||| || | ||| Sbjct 27517 GGCATCCCCCCTGACCAGCAACGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGC 27576 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || || ||||| ||| ||||| || | Sbjct 27577 ACTCTAGCAGACTACAACATCCAGAAGGAGTCTACACTCCATCTGGTGCTGCGCCTGCGT 27636 Query 40912 GGCGG 40916 || || Sbjct 27637 GGTGG 27641 >seq14182 Length=2243 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| |||||||| | || || || || | Sbjct 791 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACACTGGAGGTGGAGAGCAGC 732 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| || || | |||||| Sbjct 731 GACACCATTGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 672 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || ||||||||| Sbjct 671 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTGGCAGACTACAAC 612 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| || ||||| || | || ||| Sbjct 611 ATCCAGAAGGAGTCCACACTGCATCTGGTATTGCGTCTGCGTGGTGGC 564 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| |||||||| || | ||| Sbjct 1437 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGC 1378 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || || || || ||||||||| || | Sbjct 1377 ACACTAGCAGACTACAACATCCAGAAGGAGTCTACACTCCACCTGGTGTTGCGCCTGCGT 1318 Query 40912 GGCGGC 40917 || ||| Sbjct 1317 GGTGGC 1312 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 1969 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 1910 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || || ||||| ||| ||||| || | Sbjct 1909 ACACTAGCAGACTACAACATCCAGAAGGAGTCTACACTCCATCTGGTGCTGCGCCTGCGT 1850 Query 40912 GGCGGC 40917 || ||| Sbjct 1849 GGTGGC 1844 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || || | ||| ||||| ||||| || || | ||| Sbjct 917 GGCATCCCCCCTGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAGCTAGAAGATGGCCGC 858 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||| ||||||||| | || || ||||| ||| ||||| || | Sbjct 857 ACCCTAGCAGACTACAACATTCAGAAGGAGTCTACACTCCATCTGGTGCTGCGCCTGCGT 798 Query 40912 GGCGGC 40917 || ||| Sbjct 797 GGTGGC 792 >seq9159 Length=2836 Score = 132 bits (146), Expect = 5e-26 Identities = 133/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||| | ||||||| ||||||| | || || || |||||| ||||||| || ||||| || Sbjct 1080 CTTTGCCGAGCGCTTGGTGGCATATGCTGCTGTGGAGGGCATCTTCTTCTCAGGCAGCTT 1139 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGA 117147 | ||||| || ||||||||||| || ||| | ||||| ||||| || |||||||| || Sbjct 1140 CTGTGCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCTGGCCTCACCTTCAGCAATGA 1199 Query 117148 GCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 ||||||| ||| || ||||| ||||| ||||| | ||| ||| ||| || Sbjct 1200 GCTCATCAGCAGAGATGAGGGATTGCATACAGACTTCGGCTGCTTGTTGTACA 1252 >seq11472 Length=8128 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || || || || || | |||||||| || || |||| ||| ||||| |||||||| Sbjct 5025 GATAAGGAAGGGATTCCTCCTGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAG 5084 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| |||||||| ||| || Sbjct 5085 GATGGCCGCACCCTTGCAGACTACAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTG 5144 Query 40903 CGCTTGAGGGGCGGC 40917 || || | || ||| Sbjct 5145 CGTCTGCGTGGAGGC 5159 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| || ||||| |||||||| || | |||||||| ||| Sbjct 5947 GACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTTGCAGAC 6006 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||||| |||| |||||||| ||| |||| || | || ||| Sbjct 6007 TACAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGTCTGCGTGGAGGC 6060 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 7415 GGTATCCCCCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGC 7474 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || ||||||||||||||||||||| | || |||||||| ||| |||| Sbjct 7475 ACACTTGCAGACTACAACATCCAGAAGGAGTCTACCCTGCATCTGGTGCTGCG 7527 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| || ||||| |||||||| || | ||||| || ||| Sbjct 6840 GACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGCACTCTTGCAGAC 6899 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||||| | || |||||||| |||||||| Sbjct 6900 TACAACATCCAGAAGGAGTCTACCCTGCATCTGGTGTTGCG 6940 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| | |||||||| || | |||| || ||||| |||||||| || | ||| Sbjct 5474 GGTATCCCTCCTGACCAGCAGCGTTTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGC 5533 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||| ||||||||||||||| |||| |||||||| ||| |||| || | Sbjct 5534 ACTCTTGCAGACTATAACATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGTCTGCGT 5593 Query 40912 GGCGGC 40917 || ||| Sbjct 5594 GGAGGC 5599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || |||| || ||||| |||||||| || | ||||| || ||| Sbjct 6410 GACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCAGAC 6469 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||||| | || |||||||| || |||| || | || ||| Sbjct 6470 TACAACATCCAGAAGGAGTCTACCCTGCATCTGGTACTGCGTCTGCGTGGAGGC 6523 >seq7244 Length=2690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| |||| |||||||| | || | || ||||| |||||||| Sbjct 731 GACAAGGAGGGCATCCCACCGGATCAGCAACGCTTGATATTTGCCGGCAAGCAGCTGGAA 672 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||| ||||||||||||||| | || ||||||| || || Sbjct 671 GATGGCCGCACCCTTGCAGACTATAACATCCAGAAGGAGTCTACCTTGCATCTTGTACTG 612 Query 40903 CGCTTGAGG 40911 || || ||| Sbjct 611 CGTTTAAGG 603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515114707106000