Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq14182 125 6e-24 seq334 122 8e-23 seq11472 86.0 5e-12 >seq14182 Length=2243 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||| || | ||| ||||| || || |||||||| || || |||||| ||| Sbjct 579 CAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCATC 638 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || || ||| |||| ||||||||||| || ||||| || ||||||||||| Sbjct 639 TTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTC 698 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || || || | || | |||||| ||||||| ||||| | || | || Sbjct 699 CTGAATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGATGGT 758 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| ||||| || || ||||| || |||||| Sbjct 759 CTTGCCAGTCAGTGTCTTGACAAAGATTTGCATG 792 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTAT 118584 |||||||| ||||| ||||||||| || || |||||||| || ||| | ||||| || Sbjct 1327 CAACACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGT-GTGCGGCCAT 1385 Query 118585 CCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 | || ||||| || |||||| |||| ||||||||||| || || || ||||| Sbjct 1386 CTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCC 1437 >seq334 Length=28022 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | |||||||| || | ||| ||||| || || |||||||| || | Sbjct 27869 CCACCGCGCAGGCGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCC 27810 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||| ||||| || ||||| |||| ||||||||||| || || || Sbjct 27809 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGG 27750 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| ||| || || || | || | ||| || ||||||| ||| Sbjct 27749 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACC 27690 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || ||||| ||||| || || ||||| || ||||| Sbjct 27689 TCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 >seq11472 Length=8128 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | |||||||| || | |||||||| || || |||||||| || Sbjct 6954 TACCTCCACGCAGACGCAACACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTG 6895 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| |||||| ||||| || ||||| |||| ||||||||||| || |||| Sbjct 6894 CAAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAG 6835 Query 118630 GTATGCC 118636 | || || Sbjct 6834 GAATACC 6828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433744613427700