Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq14182 141 1e-28 seq334 131 2e-25 seq11472 84.2 3e-11 >seq14182 Length=2243 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||| ||||| |||| |||||| || || ||||| || |||||||| || | Sbjct 576 ACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCC 635 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || || ||||||||||| | || | | |||||| Sbjct 636 ATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTT 695 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || | |||| || | | |||||||| ||||| || | |||| Sbjct 696 GTCC-TGAATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGA 754 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| |||||||||||||| Sbjct 755 TGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 791 >seq334 Length=28022 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| ||| | |||| |||||| || || ||||| || ||||| || || | Sbjct 27857 CGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCA 27798 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| ||||| || || || ||||||||||| | || | | ||||||| Sbjct 27797 TCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTG 27738 Query 43089 TCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| | || | |||| || | | || ||||| ||||| || | ||||| Sbjct 27737 TCC-TGAATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGTGAT 27679 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| |||||||||||||| Sbjct 27678 GGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 >seq11472 Length=8128 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||| ||||| ||||| ||| |||||| || || ||||| || || Sbjct 5158 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCA 5099 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| |||||||| || || ||||||||||| | || Sbjct 5098 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGA 5039 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| ||| ||| || || | || | | |||||||| || ||||| Sbjct 5038 ATCCCTTCCTTATCCTGGATCTTGCTCTTTACATTCTCAATGGTGTCGCTAGACTCCAC 4980 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||||||||||| ||||| || |||||| || || ||||| || || Sbjct 6952 CCTCCACGCAGACGCAACACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCA 6893 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||||| || | || || |||||||| ||||| || || || ||||||||||| Sbjct 6892 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 6840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571701628243000