Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq14319 206 6e-49 seq6368 150 4e-32 seq8309 140 7e-29 >seq14319 Length=508 Score = 206 bits (228), Expect = 6e-49 Identities = 337/478 (71%), Gaps = 8/478 (2%) Strand=Plus/Minus Query 3062 CCCAGCTATCGACCATGCACGGCTGCAGCATGGTCAACGGGAAAATGCTC-GCGCCGTCG 3120 ||||| ||||| |||||| ||||||||||| | || |||||| | | |||| ||| Sbjct 505 CCCAGGAATCGATCATGCAGGGCTGCAGCATCGCCAGCGGGAACACCGACTGCGCA-TCG 447 Query 3121 TCGACGAACTGGCACATCAGCAGGTTCTGGAAAGCCTCGGCGTCGTACTCGAGACGCAGC 3180 |||| ||||||||||||||||||||| ||| | || | ||||||| | |||||| Sbjct 446 TCGATGAACTGGCACATCAGCAGGTTGGCGAACTCGTCCGGCCCGTACTCCTGGCGCAGC 387 Query 3181 TCGTCGATGTCGAACAGATCGCAGCCACGGGCCTCGGCATCGAGGATGGTGACGATCTGG 3240 |||||||||||||| || ||||| || | ||||| ||||| ||| || | | || Sbjct 386 TCGTCGATGTCGAAGAGGTCGCAACCGCCCGCCTCCGCATCCTCGATCGTCAGCACATGC 327 Query 3241 CGCCAGATGCGGTCCTCGCACAGTCGCCCTTGCTGCAGGGCGTCATGACTTACGTCGAT- 3299 || |||| ||| | || ||| | || ||| || | || || ||||||| Sbjct 326 CGGAAGATCTTGTCGGGCCCGAGCGCCCCGTTCTTCAGCGCCGCGTGGCTGACGTCGAAG 267 Query 3300 -CTTGATGCGATCGGCGGCCGGCTTGCCCTTGTTGAAGCGCTCGCCAGTCCAGAATGTGT 3358 | | | | ||| | |||| | | ||| || ||||| |||||||| | Sbjct 266 ACCCGCTTC--TCGTCCTTCGGCCGCCGCCGGTTCCAGTTGTCGCCGGTCCAGAAGCCAT 209 Query 3359 AGGCCTCATGCGCCATCGAACTGGGCGTCGAGAAGTAGGTCCGGCGGTAGCGCTTCTGCA 3418 ||||||| ||| || ||||||| ||| | ||||| || | ||| || Sbjct 208 AGGCCTCGTGCATCACGCTGCTGGGCGACGACAGATAGGTTTTCCGCCACTTCTTGTGGG 149 Query 3419 TCGCCAT-ACCGCTGGCGACCTTGTTCAGCTCCTTGAACTTGAACGTCCAGAAGAACTCG 3477 ||||| | || ||||||||| ||||| || |||||| ||| ||||||||||||||| Sbjct 148 CGGCCATCATCGA-GGCGACCTTATTCAGGTCGTTGAACCGGAAGGTCCAGAAGAACTCG 90 Query 3478 TCGAAGTAGAAGTTGCCGTGGTAGCCCTGGGCAGTCCGCGCGTTGGTGCCGAGGAAGT 3535 ||||||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||||| Sbjct 89 TCGAAGTAGAAATTGCCGTGATAGCCCTGCGCCGTCCGGGCGTTCGTGCCCAGGAAGT 32 >seq6368 Length=557 Score = 150 bits (166), Expect = 4e-32 Identities = 367/540 (68%), Gaps = 31/540 (6%) Strand=Plus/Minus Query 5688 CGCCGCGGCTACCACCAACCGCGCCGCCAACCCGCTGCTGCAGGACGTGAACATTGGCTG 5747 |||||| || |||| ||| | | || | |||||||| |||||||| |||| ||||| Sbjct 543 CGCCGCAGCGACCAACAAG---GACACCTATCCGCTGCTCCAGGACGTCAACAAGGGCTG 487 Query 5748 GTTCCAGCAGTACC---GCAACAACGCTCCGGCACGGGTACTGAAGGAAGG-GAAGACCA 5803 | | |||||||| || | ||| ||| | | || | | ||||| || || | Sbjct 486 GCT---GCAGTACCTGCGCGAGAACATGCCGACCCACGTCTTCAGCGAAGGCGAGGAAGA 430 Query 5804 CCGGCAAGGTGGTAGTCGGCAACGGCGCCGACGCCGACTACAAGAACCTCGACGCCCTGG 5863 | | || | |||||| | ||||| ||||||||||||||||||||||||||||| Sbjct 429 G-GACGAGATTCGCGTCGGCTCGGCCGCCGGCGCCGACTACAAGAACCTCGACGCCCTGG 371 Query 5864 TGTTCGACGTGGT-CAGCAG--CCTGATCGATCCCTGGCACCGCCGTGACCCGGGCCTGG 5920 | | |||| ||| || ||| |||| | |||| ||||| ||| | ||||||| Sbjct 370 TCATGGACGCGGTCCACCAGTTCCTGCCC---AGCTGGTACCGCAACGACACCGGCCTGG 314 Query 5921 TGGTGATCCTCGGCCGCGAGCTGGTCCACGACAAGTACTTCCCGATGGTGAACA---AGG 5977 | ||| ||| | | ||||||||||| ||||||||| | || |||| ||| Sbjct 313 TCTGCATCGTCGATCCGGGCCTGGTCCACGAGAAGTACTTCAACCTCGTCAACATCGAGG 254 Query 5978 ACCAGCCGGCAACCGAGAAGATCGCCACCGACCTCATCCTGTCGCAGAAGCGCATGGGCG 6037 | ||||| ||||| ||| ||||| ||||| || | ||||||| | | |||||| Sbjct 253 AGAAGCCG---ACCGAAAAGGTCGCCGCCGACATCCTGCTGTCGCGGCGCCAGCTGGGCG 197 Query 6038 GCCTGCCGCCGGTGGAAGTGCCCTACGTGCCCGAGAAGGGC-CTCATGGTCACCACCCTG 6096 || || | | | || |||||| | ||||| | | || || ||||| |||| Sbjct 196 GCAAGCAGGTCGCCCAGGTCCCCTAC-TTCCCGACCGGCTCGATCCTGATCACCCGCCTG 138 Query 6097 AAGAACCTGTCGCTCTACTGGCAGATCGGCGGTCGCCGCCGCTACCTGAAGGAGG--TAC 6154 | ||||| ||| |||||| ||| |||| || |||||| || || | | || Sbjct 137 GACAACCTCTCGATCTACTACCAGGACGGCAAGCGTCGCCGC-AC--GATCGTCGACAAC 81 Query 6155 -CGGAGAAGAACCGCATCGAGAACTACGAGTCCAGCAACGACGCCTACGTCGTCGAGGAC 6213 | || | ||||| |||||||||| |||||| ||||||| ||||||| |||||||| Sbjct 80 GCCAAGCGGGACCGCGTCGAGAACTATGAGTCCTCGAACGACGGCTACGTCCTCGAGGAC 21 >seq8309 Length=800 Score = 140 bits (154), Expect = 7e-29 Identities = 256/368 (70%), Gaps = 8/368 (2%) Strand=Plus/Plus Query 17588 GGCTTGCGTGCCCGGATCGATCAGGAGGTCGGTTGGCACAAGACCCTGTCGAACGTCGCC 17647 ||| |||| ||| | |||| |||| ||||| ||||||||||| | || |||||||| Sbjct 383 GGCCTGCGCGCCAAGCTCGACGAGGAAGTCGGCTGGCACAAGACGATCTCCAACGTCGCG 442 Query 17648 GTCAACGGCGTGACCGGCATCAGCGCCGACGTGTTCTGGGACCTGCAGAGCCCCAGCACC 17707 ||||||||||| |||| | | | | | | || | ||||||| |||| ||| Sbjct 443 GTCAACGGCGTCGTCGGCCTGACCCGCAAGATCAGCTTCGCCCTGCAGGACCCCTCGACC 502 Query 17708 GACGCCAACTACCTCAACGAGAACGAGGTCACCACCCTGGT--GCAGGAAGGGGGATTCC 17765 |||||| | ||| |||| || |||||| | ||| | || ||| || |||| Sbjct 503 GACGCCGGCGTCCTGAACGCCGCCGGCGTCACCGCGCTGATCCGCCAGAACGGC--TTCC 560 Query 17766 GTTTCTGGGGTTCGCGCACCTGCAGCGATGATCCGCTGTTCGCCTTCGAGAACTACACCC 17825 | |||||||| | |||||| || || ||| ||| ||||| | | | ||| Sbjct 561 GCTTCTGGGGCAACCAGACCTGCTCTGACGAGCCGGCCTTCCAGTTCGAAAGCGCCGCCC 620 Query 17826 GCACCGCCCAGGTGCTGGCCGACACTATCGCCGAAGCGCA-CATGTGGGCGGTTGACAAG 17884 |||||||| | | || ||||| ||||||| || ||| ||||||||||| |||||| Sbjct 621 GCACCGCCGACATCCTCAAGGACACCATCGCCG-AGGGCATGATGTGGGCGGTCGACAAG 679 Query 17885 CCCATG-CACCCGTCACTGGTGCGCGACATCCTTGAGGGCGTGAACGCGAAGTTCCGCGA 17943 || || | ||| | |||| |||||||||| | ||| | | ||||| ||||||||| | Sbjct 680 CCGCTGACGCCCAGC-CTGGCGCGCGACATCATCGAGACCATCAACGCCAAGTTCCGCCA 738 Query 17944 GCTCAAGG 17951 ||| |||| Sbjct 739 GCTGAAGG 746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113712486579900