Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq3220 197 5e-46 seq5538 134 5e-27 seq9554 91.5 5e-14 seq1252 82.4 3e-11 >seq3220 Length=1218 Score = 197 bits (218), Expect = 5e-46 Identities = 182/228 (80%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 44042 TCATTCCTCCTCGGCTGCCGCCGGGATCATGCCGAGCGCTGCGAGGTAGGTGTCGAGGAT 44101 |||||||||| ||| | || | || ||||||||| || ||||||||| |||||||| Sbjct 1155 TCATTCCTCC--GGCGGG-GCGGCGACCATGCCGAGGGCGGCGAGGTAGAGCTCGAGGAT 1099 Query 44102 GGCCTCTTGCTCCATCCGCTCGTCGGTGTCCTGCTTGCGCAGCGAGATCACCTTCCGCAG 44161 || ||| |||||| |||||| ||| ||||| ||||||||||| |||||||| | || Sbjct 1098 GGTCTCCTGCTCCTCGCGCTCGGCGGGGTCCTTCTTGCGCAGCGCGATCACCTGCTTGAG 1039 Query 44162 GATCTTGGCATCGAAGCCGGTCCCCTTTGCCTCGCCGTACACATCCTTGATGTCGTCGGC 44221 |||||||| ||||||||| | ||||| || ||| |||| || |||||||||||||| || Sbjct 1038 GATCTTGGTGTCGAAGCCGTTGCCCTTCGCTTCGGCGTAGACGTCCTTGATGTCGTCCGC 979 Query 44222 GATGGTCTTCTTTTCTTCCTCCAAGCGTTCGATGCGGTGGATGAAGGC 44269 ||| | |||||| |||||||| | || |||||||| | || |||||| Sbjct 978 GATCGCCTTCTTCTCTTCCTCGAGCCGCTCGATGCGCTCGACGAAGGC 931 >seq5538 Length=10074 Score = 134 bits (148), Expect = 5e-27 Identities = 148/195 (76%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 48642 AAGAAG---CCGAACCCAATCGACACGCAGGTCGGCGCCCGCATCCGGCTCCGCCGCAAC 48698 |||||| || || || || || | || ||||| |||| || |||| ||||||| Sbjct 8326 AAGAAGTCTCCCAATCCCATAGATATACACGTCGGAAGCCGCGTCAGGCTGCGCCGCATG 8385 Query 48699 ATCATCGGCATGAGCCAGGAGACGCT---GGCTGCGCATCTCGGCATCACCTTCCAGCAG 48755 || |||||||||||||||| | ||| || | || ||||| ||||| ||||||||| Sbjct 8386 ATGCTCGGCATGAGCCAGGAAAAGCTCGGGGATTCG---CTCGGTATCACGTTCCAGCAG 8442 Query 48756 GTCCAGAAATACGAAAAGGGCGCCAACCGCGTCGGCGCCAGCAGGCTGCAGGCCATCAGC 48815 ||||||| ||||| |||||| |||| ||||||||||||||| |||||||| |||| | Sbjct 8443 ATCCAGAAGTACGAGAAGGGCACCAATCGCGTCGGCGCCAGCCGGCTGCAGAACATCGCC 8502 Query 48816 GAAGCGCTCAAGGTC 48830 | | ||| |||||| Sbjct 8503 AAGGTGCTGAAGGTC 8517 >seq9554 Length=3714 Score = 91.5 bits (100), Expect = 5e-14 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 21504 TTGCCCTGCCGGATGCCGCGCCCGTCGCGTTGCTCAAGGTCGGACGGCCGCCACGGCGCA 21563 |||||||||||| | |||||| || || ||||| | | || ||| |||| ||| | Sbjct 2222 TTGCCCTGCCGGCCGATGCGCCCCTCACGCTGCTCGATTTGCGAGGGCAGCCAAGGCACG 2163 Query 21564 TCGATGTGATGCAGCGCGACGAGGCGGTTTTGGACGTTGGTACCGGCGCCCATCTTCGGC 21623 || | |||||||||||| |||||| ||| ||||| |||| |||||| | | Sbjct 2162 TCAAGGTGATGCAGCGCCTTGAGGCGCAGCTGGGCGTTGACGCCGGTGCCCATGGTTTCC 2103 Query 21624 GTCGAGCCGAACAGGAACCGGACCCGTCCGGACCTGACCTTTCCGAATAG 21673 | |||||||| ||||||||||||| |||| |||| | ||||| || Sbjct 2102 GACGAGCCGATCAGGAACCGGACCTTGCCGGCATTGACGTCACCGAACAG 2053 >seq1252 Length=1755 Score = 82.4 bits (90), Expect = 3e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 44069 CATGCCGAGCGCTGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGGT 44128 |||||||||||| | |||||| ||||| | || || || | || ||||||| Sbjct 269 CATGCCGAGCGCGGTCTTGTAGGTCTCGAGCAGCATGTCCTGTTCGCTGCGGTCGTCGGG 210 Query 44129 GTCCTGCTTGCGCAGCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCCTT 44188 | | ||| | || | | || |||| |||||||| |||| ||||| | |||| Sbjct 209 CTTCATCTTCCTGAGGCGCACGATCTGGCGCATGATCTTGGGATCGTAGCCGACCGCCTT 150 Query 44189 TGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAGCG 44248 ||||| ||| ||||| ||| |||||||||||| |||||| || ||||| | || Sbjct 149 GGCCTCCATGTAGACATCGCGGATATCGTCGGCGATGCCCTTCTTCTCCTCCTCGAGCCG 90 Query 44249 TTCGATGCGGTGGAT 44263 |||||||| | ||| Sbjct 89 CTCGATGCGCTCGAT 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183574223594100