Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_004681.1 Length=75931 Score E Sequences producing significant alignments: (Bits) Value seq106 349 2e-91 seq13239 257 8e-64 >seq106 Length=4709 Score = 349 bits (386), Expect = 2e-91 Identities = 533/757 (70%), Gaps = 7/757 (1%) Strand=Plus/Minus Query 66690 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66749 |||| ||||| ||| || ||| ||| || |||||||| ||| ||| | || || Sbjct 3597 CCACGGGCTCGCTCGGGCTCGACATCGCGCTCGGCATCGGCGGGCTGCCGCGCGGGCGCA 3538 Query 66750 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66809 | || || |||||||| || ||||| || || ||| | || || || || |||||| Sbjct 3537 TCGTCGAGATCTACGGGCCGGAATCCTCCGGCAAGACCACGCTCGCGCTGCATACGGTGG 3478 Query 66810 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66869 || | ||||||||| ||| |||| | ||||| ||||||||| |||||| | || |||| Sbjct 3477 CCGAGGCGCAGAAGCGCGGCGGCATCTGCGCCTTCATCGACGCCGAGCACGCGCTCGACC 3418 Query 66870 CCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 66929 | |||||| |||||| || |||||||| ||||| || | ||||||||| Sbjct 3417 CGATCTACGCCCGCAAGCTCGGCGTCAACCTCGACGACCTCCTGATCTCGCAGCCGGACG 3358 Query 66930 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--T 66987 | ||||||||||| || |||||| ||| || || || || | | ||| | | Sbjct 3357 CCGGCGAGCAGGCGCTCGAGATCTGCGACACGCTGGTGCGCTCGGGTG--CCGTCGACGT 3300 Query 66988 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 67047 ||||||| || || || ||||| ||| |||||| ||||||||||| ||||| || || Sbjct 3299 GCTCGTCGTCGATTCGGTCGCGGCGCTGACGCCGCGGGCCGAGCTCGAGGGCGAGATGGG 3240 Query 67048 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGG 67107 || | ||||||||| |||||||| ||| ||||| ||||||||||||| | Sbjct 3239 TGATTCGCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGC 3180 Query 67108 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 67167 | | ||||| | | || || || | ||| |||||||| | || ||||||||| Sbjct 3179 CTCGATCTCGAAGTCGAAGACCATGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 3120 Query 67168 CAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGC 67227 | || | | |||| ||||||||||||||||| || || | | ||||||||| Sbjct 3119 CGTGATGTTCGGCAGCCCC---GAGACCACCACGGGCGGCAACGCGCTCAAGTTCTACGC 3063 Query 67228 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 67287 ||| |||||| | || |||||||||||| | | |||| |||| |||| ||||| Sbjct 3062 CTCCGTCCGCCTCGACATCCGTCGCATCGGCGCGATCAAGGCGCGCGACGAGGTCGTCGG 3003 Query 67288 CAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 67347 ||||| ||||| || || || || ||||||||||| ||||||||| |||| | ||| Sbjct 3002 CAACCAGACCCGCGTCAAGGTGGTGAAGAACAAGCTCGCCCCGCCGTTCCGCGAGATCGA 2943 Query 67348 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 67407 |||| | || ||||||| |||||||||||| | ||| ||| |||| || | ||| Sbjct 2942 GTTCGACATCATGTACGGCGAGGGCATCTCGAAGCTCGGCGAGCTCGTCGATCTCGGCGT 2883 Query 67408 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 67444 | ||| | | | ||||| |||||||||||| Sbjct 2882 CAAGGCCGGCATCATCGACAAGTCCGGCGCCTGGTTC 2846 >seq13239 Length=1369 Score = 257 bits (284), Expect = 8e-64 Identities = 516/759 (68%), Gaps = 26/759 (3%) Strand=Plus/Minus Query 66632 TTCGGCGCCGGATCGGCTATGAAGCTGGGTGACAAGCCACAGACTGTGGACGTC------ 66685 |||||| || ||||| ||||||||||| ||| |||| || | ||| Sbjct 776 TTCGGCAAGGGTTCGGCGATGAAGCTGGGCTCGAAGG---AGACGATGCAGGTCGAGGCG 720 Query 66686 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 66745 || | |||||||| ||| || ||| ||| || |||||||| || | || | |||| Sbjct 719 ATCTCGACCGGCTCGCTCGGGCTCGACATCGCGCTCGGCATCGGCGGCTTGCCCAAGGGC 660 Query 66746 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66805 || ||| | || |||| ||||| ||| || || ||| | || || ||||| | Sbjct 659 CGCGTGATCGAGGTCTATGGCCCGGAAAGCTCGGGCAAGACGACGCTCGCGCTCCATGTC 600 Query 66806 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 66865 | ||| | ||||||||||| || |||| ||| |||| | |||| || || || | || Sbjct 599 ATCGCCGAGGCGCAGAAGGCGGGCGGCACCGCGGCCTTCGTCGATGCCGAACATGCGCTC 540 Query 66866 GACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 66925 || || | || |||||| |||||| || ||| ||||| | || | || ||||| Sbjct 539 GATCCGGTCTATGCCAAGAAGCTCGGGGTCGACATCGACGAGCTGATCGTTTCGCAGCCC 480 Query 66926 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66985 ||||| ||||| ||||| || |||||| ||| || || || || | | | Sbjct 479 GACACCGGCGAACAGGCGCTCGAGATCACCGACACGCTGGTGCGCTCGAACGCGATCGAC 420 Query 66986 ATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 67045 | | || || ||||| |||||||| |||||||||||||||||| |||| ||||| || Sbjct 419 GTGCTGGTGGTCGACTCGGTGGCGGCGCTGGTGCCGCGCGCCGAGATCGAGGGCGAGATG 360 Query 67046 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACT 67105 || || |||||||||||||| || || || ||| ||| | |||||||||| || Sbjct 359 GGCGATTCGCACGTCGGCCTGCAGGCCCGGCTGATGAGCCAGTCGCTGCGCAAGCTGACC 300 Query 67106 GGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAG 67162 ||| | ||| | || | || || | ||| ||| |||||||| ||||| |||| Sbjct 299 GGCTCGATCAACCGCTCGAAGTGCATGGTGA---TCTTCATCAACCAGCTGCGCATGAAG 243 Query 67163 ATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGAAAGGCTTTGAGG 67219 |||| ||| |||||| ||| |||||||| || ||||| || || | | | Sbjct 242 CTCGG---GGTGATGTACGGC---AATCCCGAGACCACGACCGGCGGCAACGCACTCAAG 189 Query 67220 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGATGA 67278 ||||| || || || | || |||| |||| || | | || ||||| |||| || Sbjct 188 TTCTATGCGAGCGTGCGGCTCGACATCCGCCGCACCGGC-CAGATCAAGGACCGCGACGA 130 Query 67279 GGCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCG 67338 | |||||||| ||| || ||||| || |||||||||||| | || ||||| | Sbjct 129 GATCATCGGCAACACCACGCGCGTGAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTTCAA 70 Query 67339 CAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTC 67377 | | ||||||| | || ||||||| ||||||||||| Sbjct 69 GCAGGTCGAGTTCGACATCATGTACGGCGAGGGCATCTC 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242806377439700