Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq9554 178 5e-40 seq15910 123 1e-23 >seq9554 Length=3714 Score = 178 bits (196), Expect = 5e-40 Identities = 867/1358 (64%), Gaps = 32/1358 (2%) Strand=Plus/Plus Query 54886 TGGATTTGGACCGACACGCAGCGCGCCGACCGGCTCGTCAACTACTACAACGAGAACTTC 54945 ||||| ||| |||| | | || |||||||||| | | ||||||||||| ||| Sbjct 472 TGGATCTGGTCCGATCCCGAACGGACCGACCGGCTTGCCCGGGACTACAACGAGCGGTTC 531 Query 54946 AACAACATCGCGCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCGTGTCGCTG 55005 ||||||||||| ||||| ||| ||||| ||||| ||| || |||| ||| | Sbjct 532 AACAACATCGCACCGCGAAGTTTCAACGGCGATCACCTTCAGCTTCCAGGCGCCTCG-GG 590 Query 55006 CG-CTTCAACCTGCGCGAAAACCAGAAGCGCGCCATCTGGCGCGGCATTCAGGAAGG--C 55062 || ||| || | ||||||| |||| |||||||||| ||| || || | Sbjct 591 CGCCTTTTCTCTTTATGGGCACCAGAAACGCGGCATCTGGCGCATCATCTCGGCGGGTTC 650 Query 55063 GACATGTACCTCGCGCACGCGGTCGGCGCGGGCAAGACGTTCACGATGATCGCGACGGGC 55122 ||| || ||||| ||||| |||||||| |||||||| | |||||| ||| | | | Sbjct 651 GAC--CTATCTCGCCCACGCCGTCGGCGCTGGCAAGACCATGACGATGGCGGCGGCAGTC 708 Query 55123 ATGGAGGAGCGCCGGCTGGGCCTCTCCAACAAGCCGATGTACGTGGTGCCGAACCACATG 55182 |||||| || ||||| || || | |||| ||||| || || || ||| Sbjct 709 ATGGAGCAGAAGCGGCTCGGGCTGATCGCCAAGGCGATGCTGGTCGTTCCCGGTCACTGC 768 Query 55183 CTCGCGCAGTTCGCACGCGAATTCCTCGAGCTCTACCCGGCCGCGAACATCATGGTCGCG 55242 ||||||||| || ||||| ||||| | |||||||||| |||| |||| | || || Sbjct 769 CTCGCGCAGGCGGCGCGCGAGTTCCTGGCGCTCTACCCGACCGCCCGCATCCTCGTTGCC 828 Query 55243 GACGAGCAGAATTTCCACACGCACAACCGCCGTCGCTTCGTCGCGCAGGCCGCGCTCAAC 55302 ||||| || ||| || | | || || | || |||| |||| | ||||| | Sbjct 829 GACGAAACCAACTTCACCAAGGATAAGCGACATCTCTTCCTCGCCCGCGCCGCCACGGCC 888 Query 55303 AATCCGGATGCGGTCATCATCACGCACTCGGCGTTCGGCCGCATCGGCATGTCCG-ACGA 55361 ||| ||||||| |||||||||| || |||||||| || |||| ||| |||| || Sbjct 889 AATTGGGATGCGATCATCATCACCCATTCGGCGTTTCGCTTCATCTCCAT-TCCGTCCGC 947 Query 55362 GTACGCGGCGCAGTTCATCTCCGACCAGATCGACGAGTGGAAAGCCGCGCTCGACGAGAC 55421 | || | |||| | ||| ||| || | || | ||| | ||| | || Sbjct 948 CTTCGAGCAGCAGATGATCCAGGACGAGTTGGAGCTTTACGAAGACCTGCTGACCAAGGT 1007 Query 55422 GGACAAGAGCGACCGGATCACGCGCAAGCAGATCGAGCGCCGCATCGNNNNNNNNNNNNN 55481 ||| |||||| | | ||||||| | | ||||| | | | Sbjct 1008 CGACGGCGACGACCGCGTGTCCCGCAAGCGGCTTGAGCGGCTGAAGGAGGGGCTCAAGGA 1067 Query 55482 NNNNNNNNNNGCGAAACAGGGCAGCGAGAAG-AAGGACAAGGTGCTGTCGTTCGAGGAGC 55540 |||| | | |||| | | |||||| | | ||| | | |||| Sbjct 1068 ACGGCT-----CGAAGC--GCTCGCGACACGCAAGGACGATCTTCTGACCATATCCGAGC 1120 Query 55541 TGGGCGTCGACCGTCTGTTCGTCGACGAATTCCACGAGTTCCGCAAACTCGACTTCGCGA 55600 | ||| |||| | | |||||||||| ||| ||||||||||| ||| ||| || | Sbjct 1121 TCGGCATCGATCAGATCATCGTCGACGAGGCCCAGGAGTTCCGCAAGCTCTCCTTTGCCA 1180 Query 55601 CGCAGCA-GAGCAACATCAAGGGCATCGACCCGGCCGGCTCGCAGCGCGCGATGGACCTG 55659 | || || | | | | ||||| |||| ||| |||||||||||| ||| |||||| Sbjct 1181 C-CAACATGTCGAGCTTGAAGGGAGTCGATCCGAACGGCTCGCAGCGGGCGTGGGACCTA 1239 Query 55660 TTCATGAAGGTCCAATACCTGCGCAGCAAGAAGCCGGGCCGCGCGCTCGTGGCCGCGTCC 55719 | | | ||| || | | | | |||||| | ||||| ||||| ||| || || Sbjct 1240 TACGTCAAGTCCCGCTTCGTTGAAACCAAGAACCTCGGCCGTGCGCTGGTGCTGGCCTCG 1299 Query 55720 GGCACGCCGGTCACGAACACGATGGGCGAGCTCTACACCGCGCAACGCTTCTTCCAGCCC 55779 ||||| ||| |||| |||||| | ||||| | | | | | ||| ||||| || | Sbjct 1300 GGCACCCCGATCACCAACACGCTCGGCGAAATGTTCTCGGTGCAGCGCTTTCTCGGCATC 1359 Query 55780 GAGCAGCTTGCAGAGGATGGTCTGGATACGTTCGACGCGTGGGCCAACCAGTACGGCGAC 55839 ||| ||| ||| ||| ||| | |||||| || |||||| | |||||| Sbjct 1360 GAGGCGCTGAGGGAGCGTGGCCTGCACGAGTTCGATGCCTGGGCCTCGACATTCGGCGAT 1419 Query 55840 ATCGTTGCGGGCTTCGAGCAGAACGCCGCCGGCGGCTACGAGGTCGTGAGCCGCTTCGCG 55899 | | | |||||| | | | ||| ||| || || | ||||| || Sbjct 1420 GTGACGACCGAACTCGAGCTTCAGCCATCGGGCAAGTACAAGCCGGTCACGCGCTTTGCC 1479 Query 55900 AAGTTCCAGAACGTGCCCGAGCTGATGCGCCGCG-TGCGCTCGTTCATGGACATCCTGAC 55958 | ||| |||||||||||||| || |||| | | ||||| || |||| || || Sbjct 1480 ACTTTCGTCAACGTGCCCGAGCTCAT-CGCCATGTTCCGCTCCTTTGCGGACGTCGTGTT 1538 Query 55959 GAGCCAACAGCTCGCGCAGTACGTCGACCGT-CCGGCGATCGAGGGCGGCGGCCGTCAGA 56017 | | | | ||| || || || || |||||| || | |||| || |||| Sbjct 1539 GCCGGAGGATTTGCGGCAATATGT-GAAGGTGCCGGCGGTCTCGACCGGCAAGCGCCAGA 1597 Query 56018 TCATGGTCACGCCGGAGCCGTTCGGC---TACAAGGCATACCAGAAGGCGCTCGAGCAGC 56074 ||| || | | || | ||||| || | | |||| ||||||| | |||||| || Sbjct 1598 TCA-GGAC-CTCCAG-GCCGTCCGCCGCTTTCAAGCGCTACCAGACCGTGCTCGACGCGC 1654 Query 56075 GCATCACCGCGATC-CGCAACCGCAAGGGCCCGCCGCAGAAGGGGCAGGACATCATCCTG 56133 | |||| |||||| | ||| | | ||||| | ||||| || | |||||| | ||| Sbjct 1655 GTATCAAGGCGATCGAGGAACGGGAGGGGCCAG-CGCAGCCCGGAGATGACATCCTGCTG 1713 Query 56134 AACGTGATCGCGGACGGCCGTTTCTCGGCGATCGACATGCGTTTCGTCGA-CCCGACCGC 56192 |||||| | |||||||| | | |||||||| ||||| | ||||| |||||| Sbjct 1714 TCGGTGATCACCGACGGCCGCCACGCCGCGATCGATCTGCGTCTGGTCGACCCCGACAAT 1773 Query 56193 GCCGAGCGACCCGAACAGCAAGCTGAACCAGATGATCG 56230 | || ||| || ||| |||||| ||| | |||||| Sbjct 1774 GGAGA-CGAGCCCGACAACAAGCTCAACGACCTGATCG 1810 Score = 149 bits (164), Expect = 3e-31 Identities = 283/409 (69%), Gaps = 12/409 (3%) Strand=Plus/Plus Query 56526 CATGGAAACCGGCGTCAACGTGCAGAAGCGCCTCTACAGCGAGG-AGCATCTGGACGCGC 56584 ||||| ||||||||||||| ||| ||||||| | ||| | | || || |||| || Sbjct 2109 CATGGGCACCGGCGTCAACGCCCAGCTGCGCCTCAAG-GCGCTGCATCACCTTGACGTGC 2167 Query 56585 CGTGGTTCCCGGCATCCGTCGAGCAGCGCGAGGGGCGCATCATCCGCCAGGGCAACCAGA 56644 | ||| | || | |||||||||| |||||||||||| ||| |||||||| ||| Sbjct 2168 CTTGGCTGCCCTCGCAAATCGAGCAGCGTGAGGGGCGCATCGGCCGGCAGGGCAATCAGC 2227 Query 56645 ACAAGCAGGTGCGCATCCGCGCGTGGGCGAC-GAAGGGCAGCTACGACTCGACCATGTGG 56703 | | || | ||| ||| | ||||| ||||| ||| |||| | ||||||||| Sbjct 2228 ATGACGAGATCGATATCTTCGCCTATGCGACGGAAGGCTCGCT-CGACGCCACCATGTGG 2286 Query 56704 GGGATGAACGCCCGCAAGGCTCGCTTCATCGAACAGGCCCTCAACGGCGACGACAGCG-T 56762 || |||| |||||||| |||||||||| |||||| ||||||| || || | Sbjct 2287 CAGAACAACGAGCGCAAGGCCCGCTTCATCGCCGCGGCCCTTTCCGGCGAC-ACCTCGAT 2345 Query 56763 GCGCTCGCTGGAGGACGTGTCCGAGGCGTCGGC------GTTCGACATGGCCGCCGCGCT 56816 ||| ||| |||||| || ||||| ||| ||||| ||||||| ||| | Sbjct 2346 CCGCAGGCTCGAGGACATGGGCGAGGGCCAGGCCAACCAGTTCGCCATGGCCAAGGCGAT 2405 Query 56817 GGCGTCGGGCGACGAGCGCTACATGAAGCTGGCCGGCCTGAAGGCCGACGTCGAGCGGCT 56876 |||||||||||| |||| ||| || ||| || || | ||||| ||| ||||| Sbjct 2406 CGCGTCGGGCGACCCGCGCCTGATGCAGAAGGCGGGGCTCGAAGCCGAAATCGCCCGGCT 2465 Query 56877 GGAGCGCCTGAGCTACGCGCACCACGACGACCAGAACAAGCTCCGGCGT 56925 |||||||||| | ||| || ||||| ||| | | |||||||| Sbjct 2466 GGAGCGCCTGCGGGCCGCCCATATGGACGATCAGCATGCGGTCCGGCGT 2514 >seq15910 Length=10648 Score = 123 bits (136), Expect = 1e-23 Identities = 386/582 (66%), Gaps = 27/582 (5%) Strand=Plus/Minus Query 52939 ACGCAGTACGCGCACTACACCAGCGAGGGCGTGATCCGCTCGATCTACGACGGCCTGCGC 52998 |||||||||||||| | ||| ||| | | |||| | |||| ||| ||| Sbjct 1507 ACGCAGTACGCGCATTTCACGCCCGAATTCATCGTCCGGGCCATCTGGTCGGGCTTGCTG 1448 Query 52999 CGCCTGGGCTTCGCCGGCGGCAAGGTGCTCGAGCCGGGCATGGGTATCGGCCTGTTCAAG 53058 || || |||| ||||||| ||||||||| || ||||| || | || ||||| Sbjct 1447 CGGCTCGGCTGGCGCGGCGGCCGGGTGCTCGAACCTGGCATCGGCACGGGGCTGTTTCCC 1388 Query 53059 GGGCTGATGCCCGACAGCATGGCCGCGACCAGCCAGTACACGGGCGTGGAGTACGACGCG 53118 | |||||||| ||| | || | || |||||| ||| ||||| ||| ||| || Sbjct 1387 GCCCTGATGCCAGACGACCTGCGCCCGGTCAGCCATGTCACCGGCGTCGAGCTGGACCCG 1328 Query 53119 CTGACCGGCGCG-ATCGCGAAGCTGCTGTATCCGCAGAGCAACATCATCGTC---GGCGA 53174 | |||| |||| ||||| ||||| | || | || | ||||||| ||||| Sbjct 1327 GTTACCG-CGCGCATCGCCCGCCTGCTCCAGCCCC---GCGCCCGCATCGTCAATGGCGA 1272 Query 53175 CTTCACGAAAACCGCGATGCCGCGCGAGTTCTTCGACGCGGCGATCGGCAACCCGCCCTT 53234 ||| | ||||| | ||||| ||| || |||| |||||||||||| |||||||| Sbjct 1271 TTTCGCCCGAACCGAGCTGCCG-GCGCATT--TCGATCTGGCGATCGGCAATCCGCCCTT 1215 Query 53235 CGCGTCCG-TCGTCGTGACGAAT--GACCCCGAGTACAAGAAACAGGGGTTCATGCTGCA 53291 |||| ||| | | | |||| | ||| | || | |||||| Sbjct 1214 T---TCCGATCGCACGGTCCGTTCGGACCGGGCGTATCGCGGCCTCGGCCTGCGGCTGCA 1158 Query 53292 CGACTACTTCTTCGCCAAGACCATCGACCGCGTGAAACCGGGCGGCATGCTCGTG---TT 53348 ||||| ||| ||| |||| | |||||||| ||||||| ||||| ||||| | || Sbjct 1157 TGACTATTTCATCGTCAAGGCGATCGACCGGCTGAAACCCGGCGG---GCTCGCGGCTTT 1101 Query 53349 CGTCACCAGCAAGGGCACGATGGACAAGG-CGA-GCGACCGCGCGCGCCGTTACCTCGCC 53406 ||||||| || || ||||||||||||| ||| | |||||||| | | | | || Sbjct 1100 CGTCACCTCCAGCGGGACGATGGACAAGGCCGATCCAACCGCGCGGGAAACGATCGC-CC 1042 Query 53407 GACCGCGCGAACCTGATCGGCGCCATGCGCCTGCCGCAGACCGCGTTCAAGGACAACGCC 53466 ||| | ||| | || ||| |||||| ||||||||| || | ||| || | | ||| Sbjct 1041 GACAGGCCGATCTTG-TCGCCGCCATCCGCCTGCCGGAGGGCAGCTTCCGGGCCGAGGCC 983 Query 53467 GGCACGGAAGTCGTTACGGACGTGCTGTTCCTCCAGAAGCGC 53508 |||||| | || || | ||| | || || ||| ||||||| Sbjct 982 GGCACGAACGTGGTGGCCGACATCCTCTTTTTCCGGAAGCGC 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204257201745675