Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14182 131 4e-25 seq334 123 6e-23 >seq14182 Length=2243 Score = 131 bits (144), Expect = 4e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| ||||| | ||| || || ||||| || || ||||| | ||||| | || ||||| Sbjct 582 TACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCATCTTC 641 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || || || || || || || | ||| || |||||||| || || || || ||||| Sbjct 642 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTG 701 Query 104470 AATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCT 104528 |||| ||||| || ||||| || | ||| ||||| || ||||| ||||| || |||| Sbjct 702 AATC-TTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGATGGTCT 760 Query 104529 TACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||||| ||||| || ||||| || ||||| Sbjct 761 TGCCAGTCAGTGTCTTGACAAAGATTTGCAT 791 >seq334 Length=28022 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||| || || ||||| || || ||||| | || || | || || || Sbjct 27851 ACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCC 27792 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || || | ||| || ||||| || || || || || |||||| Sbjct 27791 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGA 27732 Query 104471 ATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||| ||||| || ||||| || | ||||||||| || ||||| || || || ||||| Sbjct 27731 ATC-TTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACCTCCAGAGTGATGGTCTT 27673 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || ||||| || ||||| Sbjct 27672 GCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151159044062300