Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8639 159 5e-35 seq4273 158 2e-34 seq1100 154 2e-33 seq308 141 1e-29 seq9171 138 2e-28 seq3700 138 2e-28 seq8369 132 8e-27 seq11617 105 1e-18 seq8748 95.1 2e-15 seq6141 86.0 1e-12 >seq8639 Length=2761 Score = 159 bits (176), Expect = 5e-35 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| |||||| | |||||||||||||||||| Sbjct 515 CTTCGTGATAACATCCAGGGTATCACCAAGCCCGCTATCAGGCGTCTGGCTCGTCGTGGT 574 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || | |||| || |||| ||||| ||| | ||| | ||| Sbjct 575 GGTGTGAAGCGTATCAGCGGCCTCATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 634 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || ||||||||| | ||||| || Sbjct 635 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACAGAGCACGCTCGCAGGAAGACAGTG 694 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| | || ||||| ||||| | | |||||||| ||| Sbjct 695 ACAGCTATGGATGTTGTGTATGCCCTCAAGCGTCAGGGCCGCACCCTGTATGGTTTCGGA 754 Query 16694 AGTTAA 16699 ||||| Sbjct 755 GGTTAA 760 >seq4273 Length=5750 Score = 158 bits (174), Expect = 2e-34 Identities = 188/255 (74%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| |||||| | |||||||||||||||||| Sbjct 524 CTTCGCGATAACATCCAGGGCATCACCAAGCCCGCTATCAGGCGTCTGGCTCGTCGTGGT 583 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| || || | | || || |||| |||| ||| | ||| | ||| Sbjct 584 GGTGTCAAGCGTATCAGCGGCCTTATTTACGAGGAGACACGTGGTGTGCTCAAGGTGTTC 643 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || ||||||||| | ||||| || Sbjct 644 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCTCGCAGGAAGACAGTG 703 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| | || ||||| ||||| | | || || |||||| Sbjct 704 ACAGCCATGGATGTTGTGTATGCCCTCAAGCGTCAGGGCCGCACCCTGTACGGCTTTGGA 763 Query 16694 AGTTAATCTTCTAAT 16708 ||||| | ||||| Sbjct 764 GGTTAAGCAGCTAAT 778 >seq1100 Length=3564 Score = 154 bits (170), Expect = 2e-33 Identities = 192/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||| |||||||||||| | ||||| || ||||||||| Sbjct 2090 CTTCGCGACAACATCCAGGGCATCACAAAGCCAGCTATCAGACGTCTAGCACGTCGTGGT 2149 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| || || || | || || |||| ||||| ||| | ||| | ||| Sbjct 2150 GGAGTGAAGCGTATCAGCGGTCTGATTTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 2209 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | ||||||| || ||||| |||||||| | | | |||||||| Sbjct 2210 CTGGAGAACGTTGTTCGTGATGCTGTCACATATACAGAGCACGCAAGAAGGAAGACTGTT 2269 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || || || | || || || || || | | ||||| |||||| Sbjct 2270 ACAGCTATGGATGTTGTGTACGCTCTCAAGCGCCAGGGTCGCACCTTGTATGGCTTTGGA 2329 Query 16694 AGTTAATCTTCTAATCAAACTT 16715 | ||| || || ||||||| Sbjct 2330 GGCTAAACT--CAAGCAAACTT 2349 >seq308 Length=3194 Score = 141 bits (156), Expect = 1e-29 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| |||||| | |||||||||||||||||| Sbjct 2285 CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCTATCAGGCGTCTGGCTCGTCGTGGT 2344 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || | |||| || |||| ||||| ||| | ||| | ||| Sbjct 2345 GGTGTGAAGCGTATCAGCGGCCTTATCTACGAGGAGACTCGTGGTGTGCTCAAGGTGTTC 2404 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| | ||||| || Sbjct 2405 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCCGCAGGAAGACAGTG 2464 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| | || ||||| ||||| | | || || || ||| Sbjct 2465 ACAGCTATGGATGTTGTGTATGCCCTCAAGCGTCAGGGCCGCACCCTGTACGGCTTCGGA 2524 Query 16694 AGTTAA 16699 ||||| Sbjct 2525 GGTTAA 2530 >seq9171 Length=4265 Score = 138 bits (152), Expect = 2e-28 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || || |||||||| |||||| | ||||||||||| |||||| Sbjct 3157 CTTCGCGACAACATCCAGGGCATTACCAAGCCCGCTATCAGGCGTCTGGCTCGCCGTGGT 3216 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| || || | ||||||| |||| || | ||| | ||| | ||| Sbjct 3217 GGTGTCAAGCGTATCAGCGGTCTCATCTATGAGGAGACACGCGGTGTGCTCAAGGTGTTC 3276 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| | ||||| || Sbjct 3277 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCCGCAGGAAGACAGTG 3336 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | || ||||| | || ||||| ||||| | | || || || ||| Sbjct 3337 ACAGCCATGGATGTTGTGTATGCCCTCAAGCGTCAGGGCCGCACCCTCTACGGCTTCGGA 3396 Query 16694 AGTTAA 16699 ||||| Sbjct 3397 GGTTAA 3402 >seq3700 Length=4831 Score = 138 bits (152), Expect = 2e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || || |||||||| ||||| |||||||||||| | ||| ||||||| |||||| Sbjct 1038 CTTCGTGACAATATCCAAGGCATCACAAAGCCAGCTATCAGACGTTTGGCTCGCCGTGGT 1097 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || | ||||||| |||| |||| ||| ||||| | ||| Sbjct 1098 GGTGTGAAGCGTATCAGCGGTCTCATCTATGAGGAGACCCGTGGTGTGCTGAAGGTGTTC 1157 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| || ||||| ||| Sbjct 1158 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACAGAGCACGCCCGCCGGAAGACAGTC 1217 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | |||||| | || ||||| | || || || ||||| Sbjct 1218 ACAGCTATGGATGTTGTGTATGCTCTCAAGCGCCAGGGCCG 1258 >seq8369 Length=2307 Score = 132 bits (146), Expect = 8e-27 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || || || |||||||||||| | ||||| || ||||||||| Sbjct 210 CTTCGTGACAACATCCAGGGTATTACTAAGCCAGCTATCAGGCGTCTAGCCCGTCGTGGT 269 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || | ||||||| |||| |||| ||| ||||| | ||| Sbjct 270 GGTGTGAAGCGTATCAGCGGTCTCATCTATGAGGAGACCCGTGGTGTGCTGAAGGTGTTC 329 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || ||||||||| | ||||| || Sbjct 330 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACAGAGCACGCTCGCAGGAAGACAGTT 389 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | || ||||| | || || || ||||||| | || ||||| ||| Sbjct 390 ACAGCTATGGACGTGGTGTATGCTCTCAAGCGCCAGGGCCGTACCCTGTACGGTTTCGGA 449 Query 16694 AGTTAA 16699 | ||| Sbjct 450 GGCTAA 455 >seq11617 Length=7758 Score = 105 bits (116), Expect = 1e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||| |||||||| ||| | ||||| || ||||||||| Sbjct 151 CTTCGTGACAACATCCAGGGTATCACAAAGCCAGCAATCAGGCGTCTAGCCCGTCGTGGT 92 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || | ||||||| |||| |||| ||| ||||| | ||| Sbjct 91 GGTGTGAAGCGTATCAGCGGTCTCATCTATGAGGAGACCCGTGGTGTGCTGAAGGTGTTC 32 Query 16574 CTCAAGACCGTTATCCATGATGC 16596 || ||| |||| | | |||||| Sbjct 31 CTGGAGAACGTTGTGCGTGATGC 9 >seq8748 Length=2083 Score = 95.1 bits (104), Expect = 2e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16503 CTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTT 16562 ||||||||||||| || |||||| || || | |||| || |||| ||| | ||| Sbjct 2083 CTCGTCGTGGTGGTGTGAAGCGTATCAGCGGCCTCATCTACGAGGAGACTCGCGGTGTGC 2024 Query 16563 TGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAAC 16622 | ||| | ||||| ||| |||| | | |||||| | ||| || |||||||| Sbjct 2023 TCAAGGTGTTCCTGGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCCGCA 1964 Query 16623 GTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTT 16682 | ||||| || ||| |||||||| | || ||||| | || ||||| ||||| | | | Sbjct 1963 GGAAGACAGTGACCGCCATGGATGTTGTGTATGCCCTCAAGCGTCAGGGCCGCACCCTGT 1904 Query 16683 ATGGTTTTGGAAGTTAA 16699 |||| || ||| ||||| Sbjct 1903 ATGGCTTCGGAGGTTAA 1887 >seq6141 Length=572 Score = 86.0 bits (94), Expect = 1e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| |||||| |||||||||| ||||||| Sbjct 105 CTTCGCGATAACATCCAGGGCATCACCAAGCCCGCTATCAAGCGTCTGGCTCTTCGTGGT 46 Query 16514 GGAGTCAAGCGT 16525 || || |||||| Sbjct 45 GGTGTGAAGCGT 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060365368925