Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq14742 233 6e-57 >seq14742 Length=52551 Score = 233 bits (258), Expect = 6e-57 Identities = 261/349 (75%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 19792 TCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTG 19851 |||| |||||||| || ||||| || |||||||| || ||||||||| | |||||||||| Sbjct 9283 TCGTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTG 9224 Query 19852 GCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCA 19911 | ||||| ||||| || | |||||||| |||||||| || || ||||| || | | Sbjct 9223 GTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAA 9164 Query 19912 TCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG 19971 || ||||| ||||| | | ||| ||| | || || || ||||| ||||| |||| Sbjct 9163 TCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 9104 Query 19972 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTT 20031 | ||||| || ||||| |||||||| || |||||||| | || || || ||||| |||| Sbjct 9103 AAACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTT 9044 Query 20032 CTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATAT 20091 ||||||| || |||||||| ||||| ||||| | ||| ||| || || ||||| || | Sbjct 9043 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTT 8984 Query 20092 GGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTT 20140 || | || | | || || | |||||||| |||||| | || || || Sbjct 8983 GGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATT 8935 Score = 219 bits (242), Expect = 1e-52 Identities = 272/370 (74%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||||| ||| | || ||||| || ||||| | || | |||||||| || || | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| || | |||||| || || || |||| || ||||| ||||| Sbjct 12211 ATGATCCCTACATTATTAACAGCTACTTCTGTATTCATCATCGCTTTCATCGCTGCACCT 12152 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || ||||| ||||| || |||||||||||||| || || ||| | ||||||||||| Sbjct 12151 CCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 12092 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || || ||||| || || ||||| | || || || || || | || || || || || Sbjct 12091 ATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAATT 12032 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| ||||||||||||||||||||||||| ||||| || ||| | | || Sbjct 12031 TGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 11972 Query 19590 TTCCACTTCTTAATAGG-AGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| |||| | | || || ||| ||| | | |||||| |||||||| | Sbjct 11971 TGCCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTACCG 11913 Query 19649 ATTAGGAATG 19658 ||||| ||| Sbjct 11912 TTTAGGTATG 11903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144413770166100