Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq14742 244 2e-59 seq6431 105 1e-17 >seq14742 Length=52551 Score = 244 bits (270), Expect = 2e-59 Identities = 264/350 (75%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 212072 TCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAG 212131 |||| |||||||| || || ||||| ||||||||||||||||| ||| ||||||||| | Sbjct 9283 TCGTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTG 9224 Query 212132 GTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTA 212191 || | || ||||| ||||||||||||| ||||||||||| | || || || || | | Sbjct 9223 GTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAA 9164 Query 212192 TCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 212251 |||||||||| |||| || || ||| | || ||||| ||||| |||||||||| Sbjct 9163 TCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 9104 Query 212252 AGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCAT 212311 | ||||| ||||| || ||||||||||| ||||| || | | |||||||| || || | Sbjct 9103 AAACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTT 9044 Query 212312 CATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTAT 212371 | ||||||||| | |||||||||||| | || | ||||| || | || | | Sbjct 9043 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTT 8984 Query 212372 GGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTC 212421 |||| || || | ||||| | || |||||||||||| |||| |||||| Sbjct 8983 GGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 237 bits (262), Expect = 3e-57 Identities = 252/330 (76%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTA 211671 |||||||| |||||| | |||||||| | || | || || | || ||| | Sbjct 12229 GGTTGGTTCGGTGTTATCATGATCCCTACATTATTAACAGCTACTTCTGTATTCATCATC 12170 Query 211672 GCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCA 211731 || |||||||| |||||||| ||||||||||| || || ||||| ||||| |||||||| Sbjct 12169 GCTTTCATCGCTGCACCTCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCA 12110 Query 211732 TTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 || | || || |||||||||||||||||||| |||||||| | |||||||| || ||| Sbjct 12109 TTATTATACGGAAACAACATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGT 12050 Query 211792 TTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGT 211851 ||||| ||||| || || |||||||| || || | ||||||||| | ||||| |||||| Sbjct 12049 TTACATTTCTACCCAATTTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGT 11990 Query 211852 CCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCT-CAGCATACATGGGAAGACA 211910 |||||||| || | | | ||||||| | | || || | | || |||||||| | | Sbjct 11989 CCTTACCAATTAATCGTTTGCCACTTCTTCTTAGGTATTTGCTGC-TACATGGGTCGTGA 11931 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCG 211940 |||||| | || ||||||||||||||||| Sbjct 11930 ATGGGAATTATCTTACCGTTTAGGTATGCG 11901 Score = 109 bits (120), Expect = 9e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 211936 ATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTC 211995 |||||||||||||| ||| ||||| || || || || |||| ||| || |||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 211996 CTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGA 212055 | | || || |||| || ||||| ||||| || ||||||||||||||||| || ||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 212056 ACATTCAACTTCATG 212070 || |||||||||||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 96.9 bits (106), Expect = 6e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 212420 TCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATG 212479 ||||||||||||||||||| ||||| | |||| || | ||||||| || Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 212480 TTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCC 212539 | | ||| | || ||| | |||||||||||||||||||| | ||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 212540 CACTTGACTTAGCATCTG 212557 || | |||||||| |||| Sbjct 8165 CATTAGACTTAGCGTCTG 8148 >seq6431 Length=16849 Score = 105 bits (116), Expect = 1e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||| ||||| ||||||||||| || ||| | | |||||||||||||| || || ||||| Sbjct 2297 TGGAATTCTGTTCAATCACGAGTCACCACGTCGTGGTGAGACATTTGTTACCCGCAAGAT 2238 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCT 194065 ||| | | | ||| | || | ||| | | | || || ||||| || Sbjct 2237 CACAATGGCAGCAGCACGCATCAAGATGGGCCTGCAGGACACCGTGTACCTCGGTAACCT 2178 Query 194066 TAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTT 194125 | |||| ||| | ||||||||||| || ||||||||||| || || |||||| || | Sbjct 2177 TGATGCCAAGCGTGATTGGGGACATGCCAAGGATTATGTGGAGGCAATGTGGCGCATCCT 2118 Query 194126 GCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTG 194166 ||| ||||| | || ||||||| |||| | || || |||| Sbjct 2117 GCAGCAGGACAAGCCAGATGATTTTGTGGTGGCCACTGGTG 2077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807391417711000