Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq14742 426 2e-114 >seq14742 Length=52551 Score = 426 bits (472), Expect = 2e-114 Identities = 722/1044 (69%), Gaps = 25/1044 (2%) Strand=Plus/Plus Query 171791 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 171850 ||||||||| | ||||| |||||| ||| ||||| ||||| | || ||||| Sbjct 37758 ATGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTC 37817 Query 171851 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 171910 |||||| | ||||| ||||||||||| | ||| | ||||||||||| || || || Sbjct 37818 AGGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAAC 37877 Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTT 171970 ||| || || |||||||||||||||||| | || || |||||| | || || ||||| Sbjct 37878 TTTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTT 37937 Query 171971 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATG 172030 ||||| ||||| || ||||| |||| | ||||| ||| | |||| ||| |||| Sbjct 37938 CTTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCTTTATTATTCTTATG 37997 Query 172031 GGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 172090 ||||||||| |||||||| || || || |||| |||||||||||| ||||||| || Sbjct 37998 GGGACCTGAAGCACAAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACATT 38057 Query 172091 TGTAGCATTACATGGAGTCTTT-GGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTG 172149 | | || ||||||||| ||||| || | || || || ||| | | || ||||| |||| Sbjct 38058 TATTGCTTTACATGGA-TCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTG 38116 Query 172150 CAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTAT 172209 | | ||| ||||||| ||||| || | || ||||| || |||| |||| | Sbjct 38117 CTCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGT-T 38175 Query 172210 TCACGAGCATCTTTC-TAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCA 172268 | || |||| |||| || |||||||| || | | ||||| || || ||| Sbjct 38176 TTTGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGT 38235 Query 172269 TTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACT 172328 |||||||| ||||| || || |||| |||||||| | || || ||||| || ||| Sbjct 38236 TTTGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACT 38295 Query 172329 CTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCC 172388 | || ||||| || |||||||||||||||||| | | || | || || ||||||| Sbjct 38296 TTAAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCT 38355 Query 172389 ATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGT 172448 || || ||||| || || | |||||||| | ||||| | ||| ||| Sbjct 38356 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAG------------ATGGTGACGGT 38403 Query 172449 AAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGT 172508 ||| || ||| | ||||| | || ||||| | ||||||||||| Sbjct 38404 ---------GCTAACACATTCCGTGCATTTAACCCAACACAAGCTGAAGAAACTTACTCA 38454 Query 172509 ATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGA 172568 ||| | || || ||| | |||||||| || || ||||| | || || ||||| ||| | Sbjct 38455 ATGGTAACAGCGAACCGTTTCTGGTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGT 38514 Query 172569 TTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGT 172628 | | |||||| | ||| | | || ||||| | ||| | |||| ||| |||| ||| Sbjct 38515 TGGCTTCACTTCTTCATGCTTCTTGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGT 38574 Query 172629 ATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCA 172688 | || || | || | || | | || || ||||| || || ||||| || | ||| Sbjct 38575 GTAGTTGGGTTAGCTTTAAATTTACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCA 38634 Query 172689 GCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATG 172748 || || || || || || ||||| |||||||| || || ||| || | ||||||||||| Sbjct 38635 GCTGAGGATCCGGAATTCGAAACTTTCTACACAAAAAATATTATTTTAAATGAAGGTATC 38694 Query 172749 AGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTC 172808 | || |||||| | | || ||||| ||||| |||| ||||| |||||||| Sbjct 38695 CGTGCTTGGATGGCTGCGCAAGACCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTA 38754 Query 172809 TTGCCACGAGGCAACGCACTATAA 172832 || || || || || || |||||| Sbjct 38755 TTACCTCGTGGTAATGCTCTATAA 38778 Score = 280 bits (310), Expect = 2e-70 Identities = 272/350 (78%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 171168 TCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAG 171227 |||| |||||||| || |||||||| || |||||||| ||||| ||| |||||| || | Sbjct 9283 TCGTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTG 9224 Query 171228 GTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAA 171287 || | || |||||| | ||| ||||||||||||||| |||| || || ||| ||| Sbjct 9223 GTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAA 9164 Query 171288 TCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAG 171347 || | || || ||||| ||||| | ||| | || || || ||||| |||||||||| Sbjct 9163 TCCGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 9104 Query 171348 AAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCAT 171407 ||||||| |||||||| ||||| ||||| ||||| || | ||||||||||| || || | Sbjct 9103 AAACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTT 9044 Query 171408 CATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTAT 171467 | |||||||||||||||||||||||||||||| | |||| | || ||||| || | | Sbjct 9043 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTT 8984 Query 171468 GGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTC 171517 |||| || || | ||||| | || |||||||||||| | ||||||||| Sbjct 8983 GGTTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 246 bits (272), Expect = 3e-60 Identities = 278/370 (75%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||||| ||| | || ||||| || || | ||| | |||||||| ||||| | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | |||| ||| || || ||||| | || ||||||||||| ||| Sbjct 12211 ATGATCCCTACATTATTAACAGCTACTTCTGTATTCATCATCGCTTTCATCGCTGCACCT 12152 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| |||||||| || || | || |||||| | ||||| || ||||| || |||||| Sbjct 12151 CCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 12092 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 ||||||||||||||||| ||||| | |||||||| || || ||||| ||||| || || Sbjct 12091 ATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAATT 12032 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| | || | || |||||||| |||||||| ||||||||||| ||| | || Sbjct 12031 TGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 11972 Query 170966 TTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | ||||||| | | || || | ||| |||||||||| | | |||||| |||| ||| | Sbjct 11971 TGCCACTTCTTCTTAGGTATTTGCTG-CTACATGGGTCGTGAATGGGAATTATCTTACCG 11913 Query 171025 ACTAGGAATG 171034 |||| ||| Sbjct 11912 TTTAGGTATG 11903 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 171032 ATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTC 171091 ||| | |||||||| |||||| ||||| || || || | || || |||||||||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 171092 CTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGT 171151 | | ||||| |||| || ||||| ||||||||||||||||| |||||||||| || Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 171152 ACGTTCAACTTCATG 171166 || |||||||||||| Sbjct 10357 ACTTTCAACTTCATG 10343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570153142359000