Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq334 114 1e-20 seq11472 109 5e-19 seq14182 102 8e-17 seq2367 96.9 3e-15 >seq334 Length=28022 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||| ||| | ||| | || |||||||| || |||||||| || Sbjct 27870 GCCACCGCGCAGGCGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGC 27811 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | |||||||||||| || || Sbjct 27810 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 27751 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||| | ||| | |||||| || ||| | Sbjct 27750 GATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCAC 27691 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || || || || ||||| Sbjct 27690 CTCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCT 131066 ||||| |||| |||||||| | ||| | || |||||||| || |||||||| || ||| Sbjct 27641 CCACCACGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCT 27582 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| || || ||||||||||| ||| |||| | ||| |||||||| || || Sbjct 27581 -AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGTTGCTGGTCAGGGGG 27523 Query 131127 GATTCCT 131133 ||| ||| Sbjct 27522 GATGCCT 27516 >seq11472 Length=8128 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| | ||| | ||| |||||||| || |||||||| || Sbjct 5159 GCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGC 5100 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 5099 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 5040 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| || || Sbjct 5039 AATCCCTTCCTTATC 5025 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| | ||| | ||| |||||||| || ||||| || || Sbjct 5599 GCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTATAGTCTGC 5540 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||||||||| || |||| |||||||||||||| ||||| Sbjct 5539 AAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGG 5480 Query 131127 GATTCCT 131133 ||| ||| Sbjct 5479 GATACCT 5473 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||||||||| | ||| | ||| |||||||| || |||||||| || Sbjct 6060 GCCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGC 6001 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| ||||||||||| || |||| | |||||||||||| ||||| Sbjct 6000 AAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 5941 Query 131127 GATTCCT 131133 || ||| Sbjct 5940 AATACCT 5934 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||| || | ||| | ||| |||||||| || |||||||| || Sbjct 6523 GCCTCCACGCAGACGCAGTACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGC 6464 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||||||||| || |||| | |||||||||||| ||||| Sbjct 6463 AAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 6404 Query 131127 GATTCCT 131133 || ||| Sbjct 6403 AATACCT 6397 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| ||| | ||| | ||| |||||||| || |||||||| || Sbjct 6952 CCTCCACGCAGACGCAACACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCA 6893 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | |||||||||||| ||||| Sbjct 6892 AGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 6833 Query 131128 ATTCCT 131133 || ||| Sbjct 6832 ATACCT 6827 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||||||| | ||| | ||| |||||||| || |||||||| || Sbjct 7539 CCTCCACGCAGACGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCA 7480 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| || |||| | |||||||||||| || ||| Sbjct 7479 AGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGG 7420 Query 131128 ATTCCT 131133 || ||| Sbjct 7419 ATACCT 7414 >seq14182 Length=2243 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||||| || | ||| | || |||||||| || |||||||| || Sbjct 564 GCCACCACGCAGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGC 623 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 624 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 683 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| || || ||||| | ||| | || ||| || ||| | Sbjct 684 AATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCAC 743 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || || |||||| Sbjct 744 CTCCAGTGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCATG 792 Score = 102 bits (112), Expect = 8e-17 Identities = 101/128 (79%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065 |||||| |||| |||||||| | ||| | || |||||||| ||||||||||| || || Sbjct 792 GCCACCACGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCTGC 851 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | | |||||| || |||||||||||||| ||| | || | |||||||||||| || | Sbjct 852 T-AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGG 910 Query 131126 GGATTCCT 131133 |||| ||| Sbjct 911 GGATGCCT 918 Score = 89.7 bits (98), Expect = 5e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065 |||||| |||| |||||||| | ||| | || |||||||| || |||||||| || || Sbjct 1844 GCCACCACGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGC 1903 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || |||| || || ||||||||||| || |||| | |||||||||||| || | Sbjct 1904 TAGTG-TGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGG 1962 Query 131126 GGATTCCT 131133 |||| ||| Sbjct 1963 GGATGCCT 1970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GC 131065 |||||| |||| |||| ||| | || | || |||||||| || |||||||| || || Sbjct 1312 GCCACCACGCAGGCGCAACACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGC 1371 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || |||| || || ||||||||||| ||| |||| | |||||||||||| || | Sbjct 1372 TAGTG-TGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGGG 1430 Query 131126 GGATTCCT 131133 |||| ||| Sbjct 1431 GGATGCCT 1438 >seq2367 Length=7310 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 || ||| ||||| || ||||| || | ||||||||| |||| ||| | ||| || || Sbjct 360 GTGCTGGTTGACAACTGTGAACTCTCCAGACAACACACGGCGCACATAGATGTTGGATGT 301 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | |||| ||||| ||||||| ||||||||||| || ||| | || |||||||| Sbjct 300 GTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTGGCTGTGGGCATCGG 241 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGT 145211 || || | | ||| ||||| | ||||||| |||||||| Sbjct 240 GGCAACAAGCAGTGAGTTGCGGACACCGTGCTGCTTGATGT 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471917069904000