Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq106 361 3e-95 seq13239 268 4e-67 >seq106 Length=4709 Score = 361 bits (400), Expect = 3e-95 Identities = 536/757 (71%), Gaps = 7/757 (1%) Strand=Plus/Minus Query 65403 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 65462 |||| ||||| ||| || ||| ||| || |||||||| ||| ||| | || || Sbjct 3597 CCACGGGCTCGCTCGGGCTCGACATCGCGCTCGGCATCGGCGGGCTGCCGCGCGGGCGCA 3538 Query 65463 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCGGTGG 65522 | || || |||||||| || ||||| || || ||| | || || || || |||||| Sbjct 3537 TCGTCGAGATCTACGGGCCGGAATCCTCCGGCAAGACCACGCTCGCGCTGCATACGGTGG 3478 Query 65523 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 65582 || | ||||||||| ||| |||| | ||||| ||||||||| |||||| | || |||| Sbjct 3477 CCGAGGCGCAGAAGCGCGGCGGCATCTGCGCCTTCATCGACGCCGAGCACGCGCTCGACC 3418 Query 65583 CTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACA 65642 | |||||| |||||| || |||||||| ||||| || | ||||||||| Sbjct 3417 CGATCTACGCCCGCAAGCTCGGCGTCAACCTCGACGACCTCCTGATCTCGCAGCCGGACG 3358 Query 65643 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--T 65700 | ||||||||||| || |||||| ||| || || || || | | ||| | | Sbjct 3357 CCGGCGAGCAGGCGCTCGAGATCTGCGACACGCTGGTGCGCTCGGGTG--CCGTCGACGT 3300 Query 65701 CGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGG 65760 ||||||| || || || ||||| ||| |||||| ||||||||||| ||||| || || Sbjct 3299 GCTCGTCGTCGATTCGGTCGCGGCGCTGACGCCGCGGGCCGAGCTCGAGGGCGAGATGGG 3240 Query 65761 GGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACTGG 65820 || | ||||||||| |||||||| ||| ||||| ||||||||||||| | Sbjct 3239 TGATTCGCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGC 3180 Query 65821 CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGG 65880 | | ||||| | | || || || | ||| |||||||| | || ||||||||| Sbjct 3179 CTCGATCTCGAAGTCGAAGACCATGGTGATCTTCATCAACCAGATCCGGATGAAGATCGG 3120 Query 65881 CAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGC 65940 | || | | |||| ||||||||||||||||||||| || | | ||||||||| Sbjct 3119 CGTGATGTTCGGCAGCCC---CGAGACCACCACGGGCGGCAACGCGCTCAAGTTCTACGC 3063 Query 65941 CTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGG 66000 ||| |||||| | || |||||||||||| | | |||| |||| |||| ||||| Sbjct 3062 CTCCGTCCGCCTCGACATCCGTCGCATCGGCGCGATCAAGGCGCGCGACGAGGTCGTCGG 3003 Query 66001 CAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACGCCGA 66060 ||||| ||||| || ||||| || ||||||||||| ||||||||| |||| | ||| Sbjct 3002 CAACCAGACCCGCGTCAAGGTGGTGAAGAACAAGCTCGCCCCGCCGTTCCGCGAGATCGA 2943 Query 66061 GTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGT 66120 |||| | || ||||||| |||||||||||| | ||| ||| |||| || | ||| Sbjct 2942 GTTCGACATCATGTACGGCGAGGGCATCTCGAAGCTCGGCGAGCTCGTCGATCTCGGCGT 2883 Query 66121 GTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 66157 | ||| | | | ||||| |||||||||||| Sbjct 2882 CAAGGCCGGCATCATCGACAAGTCCGGCGCCTGGTTC 2846 >seq13239 Length=1369 Score = 268 bits (296), Expect = 4e-67 Identities = 516/756 (68%), Gaps = 20/756 (3%) Strand=Plus/Minus Query 65345 TTCGGCGCCGGATCGGCTATGAAGCTGGGTGACAAGCCACAGACTGTGGACGTC------ 65398 |||||| || ||||| ||||||||||| ||| |||| || | ||| Sbjct 776 TTCGGCAAGGGTTCGGCGATGAAGCTGGGCTCGAAGG---AGACGATGCAGGTCGAGGCG 720 Query 65399 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 65458 || | |||||||| ||| || ||| ||| || |||||||| || | || | |||| Sbjct 719 ATCTCGACCGGCTCGCTCGGGCTCGACATCGCGCTCGGCATCGGCGGCTTGCCCAAGGGC 660 Query 65459 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCCACGCG 65518 || ||| | || |||| ||||| ||| || || ||| | || || ||||| | Sbjct 659 CGCGTGATCGAGGTCTATGGCCCGGAAAGCTCGGGCAAGACGACGCTCGCGCTCCATGTC 600 Query 65519 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65578 | ||| | ||||||||||| || |||| ||| |||| | |||| || || || | || Sbjct 599 ATCGCCGAGGCGCAGAAGGCGGGCGGCACCGCGGCCTTCGTCGATGCCGAACATGCGCTC 540 Query 65579 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 65638 || || | || |||||| |||||| || ||| ||||| | || | || ||||| Sbjct 539 GATCCGGTCTATGCCAAGAAGCTCGGGGTCGACATCGACGAGCTGATCGTTTCGCAGCCC 480 Query 65639 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 65698 ||||| ||||| ||||| || |||||| ||| || || || || | | | Sbjct 479 GACACCGGCGAACAGGCGCTCGAGATCACCGACACGCTGGTGCGCTCGAACGCGATCGAC 420 Query 65699 ATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 65758 | | || || ||||| |||||||| |||||||||||||||||| |||| ||||| || Sbjct 419 GTGCTGGTGGTCGACTCGGTGGCGGCGCTGGTGCCGCGCGCCGAGATCGAGGGCGAGATG 360 Query 65759 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACT 65818 || || |||||||||||||| || || || ||| ||| | |||||||||| || Sbjct 359 GGCGATTCGCACGTCGGCCTGCAGGCCCGGCTGATGAGCCAGTCGCTGCGCAAGCTGACC 300 Query 65819 GGCACCATCTCCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAG 65875 ||| | ||| | || | || || | ||| ||| |||||||| ||||| |||| Sbjct 299 GGCTCGATCAACCGCTCGAAGTGCATGGTGA---TCTTCATCAACCAGCTGCGCATGAAG 243 Query 65876 ATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTC 65935 |||| ||| |||||| ||||||||| || |||||||| || | | |||| Sbjct 242 CTCGG---GGTGATGTACGGCAATCCCGAGACCACGACCGGCGGCAACGCACTCAAGTTC 186 Query 65936 TACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGATGAGGC 65994 || || || || | || |||| |||| || | | || ||||| |||| ||| Sbjct 185 TATGCGAGCGTGCGGCTCGACATCCGCCGCACCGGC-CAGATCAAGGACCGCGACGAGAT 127 Query 65995 TGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAA 66054 |||||||| ||| || |||||||| |||||||||||| | || ||||| | | Sbjct 126 CATCGGCAACACCACGCGCGTGAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCA 67 Query 66055 CGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTC 66090 | ||||||| | || ||||||| ||||||||||| Sbjct 66 GGTCGAGTTCGACATCATGTACGGCGAGGGCATCTC 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238173693697900