Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq14742 524 9e-144 seq6395 84.2 2e-11 >seq14742 Length=52551 Score = 524 bits (580), Expect = 9e-144 Identities = 728/1017 (72%), Gaps = 2/1017 (0%) Strand=Plus/Plus Query 167297 TGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 167356 |||||||||| | ||||||||| | | ||||| ||||| ||||| || ||||| Sbjct 37759 TGGTTTGATGACGCAGATGACTGGTTACGTCAAGACCGTTTTGTATTTGTAGGTTGGTCA 37818 Query 167357 GGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACG 167416 || | |||||||| || ||||||| | ||| |||| || ||| ||||||| || || Sbjct 37819 GGTCTTCTTCTTTTCCCTTGTGCTTATTTTGCACTTGGAGGTTGGTTTACTGGTACAACT 37878 Query 167417 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTT 167476 ||||| || ||||| || || || || || ||| || | || ||| ||| || Sbjct 37879 TTTGTAACATCATGGTACACACATGGTTTAGCTTCTTCATATTTAGAAGGTTGTAACTTC 37938 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-TG 167535 | || ||||| || ||||||||||| || ||||| ||| ||| || || | ||| || Sbjct 37939 TTAACAGCAGCTGTTTCAACTCCTGCAAACAGTATGGCTCACTCT-TTATTATTCTTATG 37997 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||| ||||| | || || || || | | ||||| || | || || || ||| | || Sbjct 37998 GGGACCTGAAGCACAAGGTGACTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACATT 38057 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 | | || | || ||| | || | | | || ||||||||| | || |||||||| || Sbjct 38058 TATTGCTTTACATGGATCTTTCGGTTTAATTGGATTTATGTTACGTCAATTTGAAATTGC 38117 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | | ||| | | ||||| |||||||| |||||||| || | || ||| | || || Sbjct 38118 TCGTTCAGTTAATTTACGTCCATACAATGCTATTGCTTTCTCGGCGCCTATTTCAGTTTT 38177 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| || ||||| | || || || | ||||| || | ||||| ||||| || || Sbjct 38178 TGTTTCAGTTTTCTTAATTTACCCATTAGGACAATCTGGCTGGTTTTTTGCTCCTAGTTT 38237 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 |||||| ||||| || || | ||| | |||| | || || |||||||||||||| | Sbjct 38238 TGGTGTAGCAGCTATTTTCCGTTTCATTTTATTTTTCCAAGGCTTCCATAACTGGACTTT 38297 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| ||||| |||||||| || || ||| | |||| | ||| | | | ||| || Sbjct 38298 AAACCCATTCCACATGATGGGTGTAGCAGGTGTTTTAGGAGCTGCTCTATTATGTGCTAT 38357 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 || |||| ||| || || || || | | |||||||||||| || ||||| ||| Sbjct 38358 TCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGACGGTGCTAACACATTCCG 38417 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 |||||| | | || || | || |||||||| || ||||| || || ||||| ||||| Sbjct 38418 TGCATTTAACCCAACACAAGCTGAAGAAACTTACTCAATGGTAACAGCGAACCGTTTCTG 38477 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||||||||||||||| |||||||| ||||| |||||| | |||||||| |||||| | Sbjct 38478 GTCTCAAATTTTTGGGGTTGCTTTCTCAAATAAACGTTGGCTTCACTTCTTCATGCTTCT 38537 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 |||||||| | || ||||||| |||||||| | | || | || | ||| | Sbjct 38538 TGTTCCTGTTGTAGGTCTTTGGATGTCAGCTATTGGTGTAGTTGGGTTAGCTTTAAATTT 38597 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 |||||||||||||| || || || ||| || | ||||| |||||||| || || ||||| Sbjct 38598 ACGTGCTTATGACTTCGTTTCACAAGAAATTCGTGCAGCTGAGGATCCGGAATTCGAAAC 38657 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 |||||| || ||||| || | | |||||||| ||||||| ||||||||| | ||| Sbjct 38658 TTTCTACACAAAAAATATTATTTTAAATGAAGGTATCCGTGCTTGGATGGCTGCGCAAGA 38717 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||||||||||||| |||||||||| ||||||||||| || | || || ||||| Sbjct 38718 CCAACCACATGAACGTCTTGTATTCCCTGAAGAAGTATTACCTCGTGGTAATGCTCT 38774 Score = 295 bits (326), Expect = 8e-75 Identities = 274/348 (79%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 166558 GTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGT 166617 || |||||||| ||||||||||| || |||||||| ||||| ||| | ||||| || ||| Sbjct 9281 GTTTTCCAAGCTGAGCACAACATTCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGT 9222 Query 166618 GTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTC 166677 ||||| ||||| ||| | ||||| ||||||||||| | || ||||| || | || Sbjct 9221 GTATTTGGTGGTTCATTATTCTCTGCAATGCACGGTTCATTAGTAACTTCATCTTTAATC 9162 Query 166678 CGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAG 166737 ||||| || ||||||| || ||| ||| | || ||||| || |||||||||||||| Sbjct 9161 CGTGAAACTACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 9102 Query 166738 ACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCC 166797 || |||||||| || ||||| ||||||||||| || || | ||||||||||||||||| Sbjct 9101 ACATACAACATTGTAGCTGCACATGGTTACTTTGGACGTTTAATCTTCCAATACGCTTCT 9042 Query 166798 TTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 166857 |||||||||||||| || | ||||||||| | || || ||||| || || ||||| ||| Sbjct 9041 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTAGTTGGTATTTGG 8982 Query 166858 TTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTC 166905 || |||||| | ||| || || |||||||||||| | ||||| ||| Sbjct 8981 TTCACTGCTTTAGGTATTTCAACTATGGCATTCAACTTAAACGGATTC 8934 Score = 244 bits (270), Expect = 1e-59 Identities = 279/372 (75%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 166054 TTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTG 166113 || || |||||| |||| ||| | |||||| | || | |||||||| || | Sbjct 12271 TTTTGTGAATGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTTATC 12212 Query 166114 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACC 166172 ||||| || || | || |||| || ||||| |||||| |||||||| | || ||||| Sbjct 12211 ATGATCCCTACATTATTAACAGCTACT-TCTGTATTCATCATCGCTTTCATCGCTGCACC 12153 Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232 ||| || ||||||||||| || |||||||| || | || || || | || || ||||| Sbjct 12152 TCCAGTTGATATCGATGGTATTCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 12093 Query 166233 CATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCAT 166292 ||||||||||||||||||||| || | || ||||| |||||| | || ||||| || || Sbjct 12092 CATCATCTCTGGTGCTGTTGTTCCTACATCAAACGCTATTGGTTTACATTTCTACCCAAT 12033 Query 166293 CTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGT 166352 |||||||| |||| | ||||| ||| | || ||||||||||||| ||| | | || Sbjct 12032 TTGGGAAGCTTCATCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 11973 Query 166353 CTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCG 166412 | ||||||| || | || || | |||||||||||||||||||||||| |||||||| Sbjct 11972 TTGCCACTTCTTCTTAGGTATTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTACCG 11913 Query 166413 CCTCGGTATGCG 166424 | |||||||| Sbjct 11912 TTTAGGTATGCG 11901 Score = 122 bits (134), Expect = 1e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 166420 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTC 166479 ||||||||||||||| ||||| |||||||| || |||||||| || | ||||| ||| Sbjct 10477 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCTCCAGTTGCAGCTGCTACTGCAGTATTC 10418 Query 166480 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGC 166539 | |||||||| |||| ||||||||||||||||| | ||||| | |||||| ||| Sbjct 10417 ATCATCTATCCTATCGGACAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTATCTCTGGA 10358 Query 166540 ACCTTCAACTACATG 166554 || ||||||| |||| Sbjct 10357 ACTTTCAACTTCATG 10343 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 166904 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATG 166963 ||||||||||||| || | | || ||| |||||||| | |||||||||||||| Sbjct 8285 TCAACTTCAACCAATCAGTAGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGCAGACA 8226 Query 166964 TCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCC 167023 || ||||||||||| | ||||||||||| ||||||||||||||||| |||||||||| Sbjct 8225 TCATCAACCGTGCTAACTTAGGTATGGAAGTTATGCACGAGCGTAATGCGCACAACTTCC 8166 Query 167024 C 167024 | Sbjct 8165 C 8165 >seq6395 Length=39126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 20226 TCCTCTTTAGCTCAGCGGT-AGAGCGATTGACTGTTAATCAATTGGTCCCTGGTTCGATC 20284 |||||| |||||||||||| |||||| |||||||||||||||| |||| | ||||||||| Sbjct 8329 TCCTCTCTAGCTCAGCGGTTAGAGCGCTTGACTGTTAATCAATAGGTCGCAGGTTCGATC 8270 Query 20285 CCAGGAAGGGGAG 20297 || | || |||| Sbjct 8269 CCTGCGAGAGGAG 8257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567116958260000