Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq334 143 2e-29 seq14182 125 6e-24 seq7244 87.8 2e-12 >seq334 Length=28022 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || ||||||| || ||||| | || | Sbjct 27643 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCAGC 27702 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| || ||||| |||||||||||||| || || || || Sbjct 27703 GATACCATTGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATCCCCCCTGACCAG 27762 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | |||||| ||||||| | | || |||||| Sbjct 27763 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAAC 27822 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||| | || ||||| ||||||| || Sbjct 27823 ATCCAGAAGGAGTCCACACTTCATCTGGTGTTGCGCCTGCGCGGTGG 27869 >seq14182 Length=2243 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | || || || || |||| || || ||||| | || | Sbjct 791 ATGCAAATCTTTGTCAAGACACTGACTGGCAAGACCATCACACTGGAGGTGGAGAGCAGC 732 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || ||||| ||||||||||||||||| || || || Sbjct 731 GACACCATTGAGAATGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAG 672 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | || ||| |||||| | | || |||||| Sbjct 671 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTGGCAGACTACAAC 612 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||| | || ||||| |||| || || Sbjct 611 ATCCAGAAGGAGTCCACACTGCATCTGGTATTGCGTCTGCGTGGTGG 565 >seq7244 Length=2690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 22309 CAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTA 22368 || ||||||||||| || ||||| ||||| ||||| | |||||||||||||| ||| | Sbjct 734 CAGGACAAGGAGGGCATCCCACCGGATCAGCAACGCTTGATATTTGCCGGCAAGCAGCTG 675 Query 22369 GAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||| ||||||| | | || || ||||| || || || || ||| | ||| | || Sbjct 674 GAAGATGGCCGCACCCTTGCAGACTATAACATCCAGAAGGAGTCTACCTTGCATCTTGTA 615 Query 22429 TTGCGATT 22436 |||| || Sbjct 614 CTGCGTTT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419645002067125