Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6527 179 8e-40 seq6394 113 9e-20 seq2139 113 9e-20 seq7157 91.5 3e-13 seq8754 87.8 4e-12 >seq6527 Length=17209 Score = 179 bits (198), Expect = 8e-40 Identities = 150/184 (82%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236 |||| |||||||||| || ||||| ||||| ||||| || || ||||| ||||| ||| Sbjct 14409 TTGGTGCCAATGGTGCCGGCAAGTCCACCCTGATCAAGGTGCTCACTGGAGAGACTGAGG 14468 Query 280237 CCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACG 280296 |||||||||| | || |||||||| |||||| | || || || ||||| |||||||| | Sbjct 14469 CCACTGAGGGTACAGTCTGGAAGCACCCCAACCTACGTATTGCGTACGTGGCTCAGCATG 14528 Query 280297 CTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCT 280356 ||||||||||||| ||| | |||||||||| ||| ||||| | ||||| |||||||| | Sbjct 14529 CTTTCCACCACATTGAGCAGCACCTGGACAAGACACCTAATGAGTACATCCAGTGGCGTT 14588 Query 280357 ATGC 280360 |||| Sbjct 14589 ATGC 14592 Score = 129 bits (142), Expect = 1e-24 Identities = 153/207 (74%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 || ||||| |||||||| ||||||||| |||| |||||||| |||||||| | | | Sbjct 13595 CTGCTGCTAGATGAGCCCACCAACCACTTGGATGTGACCAACGTCGCCTGGCTGGAGAAC 13654 Query 279828 TACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTA 279887 ||||| |||| ||||||| ||| | ||| ||||||| || || || ||||| ||||| Sbjct 13655 TACCTCACCAACCTGAAGACTGTGACCTCCATCATTGTGTCACATGATTCTGGGTTCCTG 13714 Query 279888 GATGCCGTGTGCTCTGCCATCATTCACTATG---AGCAAAATCTGAAGCTCTCCAAGCAC 279944 || |||||||| | |||||| ||||||| | | || || ||| | | |||| Sbjct 13715 GACCGTGTGTGCTCAGACATCATCCACTATGCCAACCGCAAGCTCAAGGTGTACAAG--- 13771 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCA 279971 ||||||||||| || || |||||| Sbjct 13772 ---GGCAACCTGTCAGCCTTTGTGGCA 13795 Score = 120 bits (132), Expect = 6e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 |||||| || || || ||||||| ||||| || || ||||||| ||||||||||| || Sbjct 12771 AGGTGAAGAACTCTGCAACTGTGAGTTCTCTCTTGCTTATGGTGCCAAGATTCTGCTGAA 12830 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | || | | | ||| |||||||| || |||||||| ||||||||||| | Sbjct 12831 CAACGCCACCATGCGCCTCATCCGTGGCAATCGCTATGGTCTGTGTGGTCCCAATGGTGT 12890 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 ||| ||| |||||| ||| | || ||||| || |||||| |||| || || ||| || Sbjct 12891 GGGAAAGTCCACTCTGATGAGAGCTATTGCCAATGGTCAGGTGGATGGCTTCCCTCCTGC 12950 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACAT 279559 | |||| | | || || || || |||||||| || Sbjct 12951 AGATGAGCTGCGCACTGTCTACGTGGAGCACGATAT 12986 >seq6394 Length=20407 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 13165 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13224 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 13225 CCCACATCGGGC 13236 >seq2139 Length=4416 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 4154 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4095 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 4094 CCCACATCGGGC 4083 >seq7157 Length=7910 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||| || ||| | ||||||||||| || || || | ||| || || || ||| | Sbjct 6164 AGGTGGCCCAGCTGTCTGGTTATGTGTCGGAGCACTCAGCCTATCACCATGGAGAGGCCA 6223 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 ||||||| | | ||||||||| | |||||||||| ||| || || || ||| ||||| Sbjct 6224 GTCTGCAAAGCACTATTGTAGGCCTTGCACAGGACTTTGTCGGTAGCAATAACCTGAACC 6283 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGAT 218826 ||||| ||||| || || || ||| | ||| | ||| || |||||| Sbjct 6284 TGCTGTACCCCAGTGGACAATTCGGTACCCGTTTGCAGGGAGGCAAGGAT 6333 >seq8754 Length=8166 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 || ||||||||||||||||||||||| || |||| ||||| | || || || || Sbjct 1399 TCTGGTGGTTGGAAGATGAAGCTGGCTCTGGCTCGTGCCATGTTGCTCAAGGCAGACATC 1340 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 | ||||| |||||||| |||||||| ||||||| || ||||| || ||| Sbjct 1339 TTGCTGCTGGATGAGCCCACCAACCATCTGGACACAACGAACGTGGCATGG 1289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027623130395225