Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6527 161 2e-34 seq9587 131 3e-25 seq6394 125 1e-23 seq2139 125 1e-23 seq14182 93.3 8e-14 >seq6527 Length=17209 Score = 161 bits (178), Expect = 2e-34 Identities = 161/206 (78%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 224975 GCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGG 225034 ||||| |||||||||||||||| || || ||| |||||||||| | |||||| |||||| Sbjct 14592 GCATAACGCCACTGGATGTACTCATTAGGTGTCTTGTCCAGGTGCTGCTCAATGTGGTGG 14533 Query 225035 AAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGA 225094 ||||||||||| || |||||||| || || | |||||| |||||||| || | ||| | Sbjct 14532 AAAGCATGCTGAGCCACGTACGCAATACGTAGGTTGGGGTGCTTCCAGACTGTACCCTCA 14473 Query 225095 GTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 || | | | ||| || ||||| |||||||| || || | |||||| |||||||||| Sbjct 14472 GTGGCCTCAGTCTCTCCAGTGAGCACCTTGATCAGGGTGGACTTGCCGGCACCATTGGCA 14413 Query 225155 CCAATCAC-GCCAATCCGGGATGACA 225179 |||| ||| ||| || ||||||| Sbjct 14412 CCAA-CACAAGCAACACGAGATGACA 14388 Score = 104 bits (114), Expect = 4e-17 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 225364 TGCCACGAAAGCAGACAGGTTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATG 225423 |||||| || || |||||||| || || | | |||||||| |||| | || || Sbjct 13795 TGCCACAAAGGCTGACAGGTTGCCCTTGTACACCTTGAGCTTGCGGTTGG---CATAGTG 13739 Query 225424 AACAATTGCCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA 225483 | || | |||||||| ||| ||||| ||||| || || |||||||||||||| | Sbjct 13738 GATGATGTCTGAGCACACACGGTCCAGGAACCCAGAATCATGTGACACAATGATGGAGGT 13679 Query 225484 CACGTTCGTCAGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTG 225543 ||| || ||||| |||||| | ||||| || |||||| | || |||| ||| Sbjct 13678 CACAGTCTTCAGGTTGGTGAGGTAGTTCTCCAGCCAGGCGACGTTGGTCACATCCAAGTG 13619 Query 225544 GTTTGTAGGTTCGTCCAGAAGCAGGATGTCAGC 225576 ||| || || || || || ||||| |||||||| Sbjct 13618 GTTGGTGGGCTCATCTAGCAGCAGAATGTCAGC 13586 >seq9587 Length=1384 Score = 131 bits (144), Expect = 3e-25 Identities = 238/346 (69%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| ||||| |||||| | |||||||| ||| || |||||| |||||||| || Sbjct 232 CTGTAGCATCCGCCACATGCCCTCGACATACTCCTTGGCGAAGCCCCAGTCGCGCTTGGC 291 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCG 268365 || | || ||||| ||||| | ||||||||||||| | || | | | Sbjct 292 ATCGAGATTGCCGAGTTCGAGGCAGTCGAGCTTGCCGAGCTTGATCTTGGCGACGCTGTC 351 Query 268366 AGTGATTTTTCGGGTCACGAACGTCTC-GCCACGTAGAGGGCTCTCGTGGTTGAAGAGGA 268424 ||||| || ||||||||||| || | ||| || || |||||||||||||||||||||| Sbjct 352 GGTGATCTTGCGGGTCACGAA-TTCGCGGCCGCGCAGCGGGCTCTCGTGGTTGAAGAGGA 410 Query 268425 TGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAA 268484 ||||| ||| |||| ||||| || ||| ||||||||||| |||||| || Sbjct 411 TGCCGCTGCTGCCGAAGATGCCGTAGCTCTCGCGGTAGTTCACCGTGATCCAGTGCGCGT 470 Query 268485 ACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGA 268544 | | ||| || || | || || || || | |||||||||||| | || || | Sbjct 471 AAAGCTTGGCGACGCCATAGGGGCTGCGCGGGTAGAAGGGCGTCGTCTCGGTCTGCGGTA 530 Query 268545 TTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAA 268590 | | | || ||||| || | ||| ||||| || |||||||| Sbjct 531 TGGCCTGTACCTTGCCGAACATCTCCGAGGTGCTCGCCTGGTAGAA 576 >seq6394 Length=20407 Score = 125 bits (138), Expect = 1e-23 Identities = 71/72 (99%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 13165 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13224 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 13225 CCCACATCGGGC 13236 >seq2139 Length=4416 Score = 125 bits (138), Expect = 1e-23 Identities = 71/72 (99%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4154 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4095 Query 84516 CCCACATCGGGC 84527 |||||||||||| Sbjct 4094 CCCACATCGGGC 4083 >seq14182 Length=2243 Score = 93.3 bits (102), Expect = 8e-14 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 || |||||||| |||||||| ||||||| ||| ||||| || |||| | ||||| || Sbjct 1740 CCCTCCTTGTCCTGAATCTTGCTCTTGACGTTCTCAATGGTATC-GCTGCTCTCTACCTC 1798 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || ||||| |||||||| || |||||||| Sbjct 1799 CAGTGTGATGGTTTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 1843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921435483457000