Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3654 120 6e-22 seq9159 107 4e-18 >seq3654 Length=3311 Score = 120 bits (132), Expect = 6e-22 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 244663 CACAAACTCGTTG-AGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 ||||||| ||| | ||||| | | |||| |||||| || || ||| || | | ||| Sbjct 901 CACAAAC-CGTGGTAGGGCAATGGATGCCAAGTTGCACACCGCAGTCTCATCTGGGCTGG 959 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||||| |||||||| ||||| ||||| ||||||||||| |||||||||| ||| || | Sbjct 960 TGTACTCCACAATCTCAGTGCACAGGTTGCTGCACTTGATTGTGCCCAGGTTCTGCTGGT 1019 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 || ||| |||||| || |||||||| |||||| |||| Sbjct 1020 TGCTTTTGCGGTTGCAAGCATCCTTGTACAGCATGTAGGG 1059 Score = 107 bits (118), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 244292 TTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTC 244351 |||| ||||||||||| |||||| | ||||||||||| ||||||||||| |||||| Sbjct 204 TTGACACCCCACATGTCGTGCTGCAGTACACCCTTGCTGACTGGGCTGCCCTCATAGGTC 263 Query 244352 GGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATG 244411 |||| ||| | || ||||| | ||||| | |||||| | |||||||||| Sbjct 264 TCATAGGTACCATGCTCCTTGGCCAATGTGCAGCTTGTCTGGAGGGCTGAGTAGTAGATG 323 Query 244412 GTCTCGAAGATCATCT-TGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCAT 244470 ||||| ||||| ||| |||| | || |||| || | ||||| | |||| Sbjct 324 GTCTCAAAGAT-GTCTCTGTTGAGCTCTGCTGCCTCTGGGCTGTCAAAGGGCAAACCCAG 382 Query 244471 CATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTT 244530 || || |||| ||| ||||| ||||| || || | || || || ||||| ||| ||| Sbjct 383 CAGCAGGAAGGTGTCAGCCAGACCCTGGACACCCAGACCAATAGGCCTGTGGCGCACGTT 442 Query 244531 G 244531 | Sbjct 443 G 443 Score = 86.0 bits (94), Expect = 1e-11 Identities = 172/255 (67%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 244912 GGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGG 244971 ||||||||| | |||||| ||||||||||| | ||||| || | || Sbjct 1327 GGTGTACAGCTTGTTGAACTCCTCTCCCCAGACCTCTGCCAGGCCTGGAGCCTCATTGGG 1386 Query 244972 GCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCA 245031 ||| | |||||||| || | | | || || | || |||||| || || |||||| Sbjct 1387 GCAGAACAGACTCCAGTCTTGGTCCTGCTCCACTCGCTTCATGAACAGATCATTGATCCA 1446 Query 245032 GAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTC 245091 |||| | | ||| || || | || | | ||| ||| ||| |||||| | ||| || Sbjct 1447 GAGGCCATAGAACAGATCACGGGCACGGTTCTCCTCCTTGCCGTGGTTCTTGCGCAGGTC 1506 Query 245092 CAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCG 245151 | |||||||||| ||| ||||||||||||| || |||| |||| ||| || || Sbjct 1507 AAGGAAGTCAAAGATGTCTGCGTGCCAGGGCTCAATATAGATGGCGAAGGCACCCTTGCG 1566 Query 245152 CTTGTTGCCTCCCTG 245166 |||| || ||||| Sbjct 1567 CTTGCCACCGCCCTG 1581 >seq9159 Length=2836 Score = 107 bits (118), Expect = 4e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 |||| | |||| || | | | || || ||||||||||||||||| ||| |||| | Sbjct 1086 CGAGCGCTTGGTGGCATATGCTGCTGTGGAGGGCATCTTCTTCTCAGGCAGCTTCTGTGC 1145 Query 42758 CATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 |||||||||||||||| || | | |||||| || ||||||||| || || ||||| Sbjct 1146 CATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCTGGCCTCACCTTCAGCAATGAGCTCAT 1205 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854 |||||| || ||||| |||||| ||||| | |||| Sbjct 1206 CAGCAGAGATGAGGGATTGCATACAGACTTCGGCTGC 1242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944147676206000