Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_009234.1 Length=35741 Score E Sequences producing significant alignments: (Bits) Value seq14319 210 5e-50 seq8309 156 1e-33 seq6368 98.7 2e-16 >seq14319 Length=508 Score = 210 bits (232), Expect = 5e-50 Identities = 344/490 (70%), Gaps = 12/490 (2%) Strand=Plus/Plus Query 3401 GCGACGCTGTACTTCCTGGGGACGAACGCGCGTACCGCGCAGTCGTATCACGGCAACTTC 3460 ||||| | ||||||||||| |||||||| || || |||||| ||||||||||| ||| Sbjct 22 GCGACCATCTACTTCCTGGGCACGAACGCCCGGACGGCGCAGGGCTATCACGGCAATTTC 81 Query 3461 TATTTCGACGAATACTTTTGGG--TTCCGAAGTTCCGCGAGTTGAACAAGGTTGCGTCGG 3518 || |||||||| | ||| ||| ||||| |||| ||| |||| ||||| || ||| Sbjct 82 TACTTCGACGAGTTCTTCTGGACCTTCCG--GTTCAACGACCTGAATAAGGTCGCCTCGA 139 Query 3519 GCATGGCGATGCACAAGCGCTGGCGCAAGACCTACTTCAGCACGCCGTCGAGTGTCACGC 3578 ||||| |||||| ||||| || ||||| | |||| || || | || Sbjct 140 TGATGGCCGCCCACAAGAAGTGGCGGAAAACCTATCTGTCGTCGCCCAGCAGCGTGATGC 199 Query 3579 ACGAGGCGTTCGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGG-CGAG 3637 ||||||| | | ||||||| ||||| || |||||| | || |||| || |||| Sbjct 200 ACGAGGCCTATGGCTTCTGGACCGGCGACAACTGGAACCGGCGGCG-GCCGAAGGACGAG 258 Query 3638 ---CGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGAC 3694 || || ||||| ||||||| |||||| | ||| | | | ||| Sbjct 259 AAGCGGGTCT---TCGACGTCAGCCACGCGGCGCTGAAGAACGGGGCGCTCGGGCCCGAC 315 Query 3695 GCGCAGTGGCGGCAGATCGTGACCGTGCTCGACGCGATGGCGGGCGGCTGCAACCTGTTC 3754 | | ||||| | |||| | || ||| ||||||||| ||| |||| ||| Sbjct 316 AAGATCTTCCGGCATGTGCTGACGATCGAGGATGCGGAGGCGGGCGGTTGCGACCTCTTC 375 Query 3755 GACATCGACGAGCTGCGCCGCGAATACAGCGCCGAGGAATTCGCGAACCTGCTGATGTGC 3814 ||||||||||||||||||| || ||| | | || || ||||| ||||||||||||||| Sbjct 376 GACATCGACGAGCTGCGCCAGGAGTACGGGCCGGACGAGTTCGCCAACCTGCTGATGTGC 435 Query 3815 CACTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTC 3874 || |||||||||||| ||| |||||||||| |||| || ||||| | ||||||| || Sbjct 436 CAGTTCATCGACGATGCGCAGTCGGTGTTCCCGCTGGCGATGCTGCAGCCCTGCATGATC 495 Query 3875 GACTCGTGGG 3884 || || |||| Sbjct 496 GATTCCTGGG 505 >seq8309 Length=800 Score = 156 bits (172), Expect = 1e-33 Identities = 304/444 (68%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 23454 GTGTTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCT-- 23511 |||||| | ||||||| | ||| || ||||| | | |||||| | ||||| Sbjct 798 GTGTTCCGGGCCGGATCAAGCCAGGCCTCGCCGCCCAGGATGTAGCCCTG---GACCTTC 742 Query 23512 -GCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGC 23570 |||| || ||| | |||||||| | || | |||||||||||| || || ||||| Sbjct 741 AGCTGGCGGAACTTGGCGTTGATGGTCTCGATGATGTCGCGCGCCAGGCTGGGCGTCAGC 682 Query 23571 GGGCCGTCGACGACGGGCATC-TGCGCTTCGGCGATCGAATCGGCGGCCACCTGAGCGGT 23629 || |||||| | |||| ||| || ||||||| | || | | | ||||| Sbjct 681 GGCTTGTCGACCGCCCACATCATGCCCT-CGGCGATGGTGTCCTTGAGGATGTCGGCGGT 623 Query 23630 GCGCGTGTAGTTCTCGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAA 23689 ||| | | | | |||||| ||| ||| ||||| ||||| || | | ||||||||| Sbjct 622 GCGGGCGGCGCTTTCGAACTGGAAGGCCGGCTCGTCAGAGCAGGTCTGGTTGCCCCAGAA 563 Query 23690 CCGGAAGCCGTT---GCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGC 23746 ||||||||||| |||| || |||| || || || |||||||| ||| || Sbjct 562 GCGGAAGCCGTTCTGGCGGATC---AGCGCGGTGACGCCGGCGGCGTTCAGGACGCCGGC 506 Query 23747 ATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTT 23806 ||||||| |||||||||| | | | | | | | | |||| |||||||| Sbjct 505 GTCGGTCGAGGGGTCCTGCAGGGCGAAGCTGATCTTGCGGGTCAGGCCGACGACGCCGTT 446 Query 23807 CACGACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAA 23866 || |||| || || ||||||||||||||||||| || | ||||| ||| ||||||| Sbjct 445 GACCGCGACGTTGGAGATCGTCTTGTGCCAGCCGACTTCCTCGTCGAGCTTGGCGCGCAG 386 Query 23867 GCCGGCGGCGATCGCCGGCGCCGG 23890 |||| |||||| ||||| ||||| Sbjct 385 GCCGACGGCGACCGCCGCGGCCGG 362 >seq6368 Length=557 Score = 98.7 bits (108), Expect = 2e-16 Identities = 344/517 (67%), Gaps = 39/517 (8%) Strand=Plus/Plus Query 755 CGAAGTCTTCGACCACGTAGGCGTCGTTCGACGATTCGTAGTTCTCGATGCGGTCGCGTT 814 ||| ||| |||| |||||| |||||||||| || || |||||||||| |||||| || | Sbjct 17 CGAGGTCCTCGAGGACGTAGCCGTCGTTCGAGGACTCATAGTTCTCGACGCGGTCCCGCT 76 Query 815 CCGGCACTTCCTTC-AGCGTGCGCCGGCGCGCGCCTTCCTGGTAGTAGATCGACAGATTT 873 ||| | | | | |||||| || ||| ||| ||||||||||||||||| || || Sbjct 77 T-GGCGTTGTCGACGATCGTGCGGCGACGCTTGCCGTCCTGGTAGTAGATCGAGAGGTTG 135 Query 874 GACAGCTTCGTGACCATCAGCGCGCGCTTCGGGAAGAACGGCACGCGCACGGCCGGCAGA 933 ||| |||| || | || || |||||||| | || || | || || || Sbjct 136 TCCAGGCGGGTGATCAGGATCGAGCCGGTCGGGAAGTAGGGGACCTGGGCGACCTGC--- 192 Query 934 TTGCCGATGCGCTTCTGGC-TCACG--ATCAG---ATCGGCCGCGAGCCGCTCGGTCGGC 987 ||||| || | ||||| | || | ||| ||||| |||| | ||||||||| Sbjct 193 TTGCC---GCCCAGCTGGCGCCGCGACAGCAGGATGTCGGCGGCGACCTTTTCGGTCGGC 249 Query 988 GCCTGCGTCG-CGTTGACGATCGGGAAATACTTGTCGTGCAGCAGCTCGCGGCCGCAGAT 1046 || | ||| |||||||| ||| ||||| ||||| | ||| | | || ||| Sbjct 250 TTCT-CCTCGATGTTGACGAGGTTGAAGTACTTCTCGTGGACCAGGCCCGGATCGACGAT 308 Query 1047 CGCGACGAGGCCCGTGTCTTCCTGGAACCA-CGGGTC--GATCATCGACGACACGATATC 1103 ||| ||||| ||||| | || |||| | || | || | | | ||| || || Sbjct 309 GCAGACCAGGCCGGTGTCGTTGCGGTACCAGCTGGGCAGGAAC-TGGTGGAC-CG-CGTC 365 Query 1104 CATCACGAGCGCGTCGAGGTTCTCGTAAT------CGCCCGCCTTGCCGACGAGCACCTT 1157 ||| || || ||||||||||||| ||| | || | ||| ||||||| | | || Sbjct 366 CATGACCAGGGCGTCGAGGTTCTTGTAGTCGGCGCCGGCGGCCGAGCCGACGCGAATCT- 424 Query 1158 GCCGGCCTGCTTCGCGCCTTCG-TGCAGCACGCGCTGTGCCGCGCGCTCGC---GGTACT 1213 || ||| | | |||||||| || || ||| | | | | ||||| ||||| Sbjct 425 --CGTCCTCTTCCTCGCCTTCGCTGAAG-ACGTGGGTCGGCATGTTCTCGCGCAGGTAC- 480 Query 1214 GTTGCAGCCAACCGATGTTCACGTCCTGCAACAGCGG 1250 |||||||| || |||| |||||||| | |||||| Sbjct 481 --TGCAGCCAGCCCTTGTTGACGTCCTGGAGCAGCGG 515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114227587315350