Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq14319 237 4e-58 seq8309 156 1e-33 seq6368 98.7 2e-16 >seq14319 Length=508 Score = 237 bits (262), Expect = 4e-58 Identities = 350/490 (71%), Gaps = 12/490 (2%) Strand=Plus/Plus Query 3456 GCGACGCTGTACTTCCTGGGGACGAACGCGCGCACCGCGCAGTCGTACCACGGCAACTTC 3515 ||||| | ||||||||||| |||||||| || || |||||| || |||||||| ||| Sbjct 22 GCGACCATCTACTTCCTGGGCACGAACGCCCGGACGGCGCAGGGCTATCACGGCAATTTC 81 Query 3516 TACTTCGACGAATACTTTTGGG--TTCCGAAGTTCCGCGAGCTGAACAAGGTCGCCTCCG 3573 ||||||||||| | ||| ||| ||||| |||| ||| ||||| ||||||||||| Sbjct 82 TACTTCGACGAGTTCTTCTGGACCTTCCG--GTTCAACGACCTGAATAAGGTCGCCTCGA 139 Query 3574 GCATGGCGATGCACAAGCGCTGGCGCAAGACTTACTTCAGCACGCCGTCCAGCGTCACGC 3633 ||||| |||||| ||||| || || || | |||| |||||| | || Sbjct 140 TGATGGCCGCCCACAAGAAGTGGCGGAAAACCTATCTGTCGTCGCCCAGCAGCGTGATGC 199 Query 3634 ACGAGGCGTACGCGTTCTGGAGCGGCGCGCACGCGAACCGCGGCCGCGCCGCGGG-CGAG 3692 ||||||| || | ||||||| ||||| || |||||| | || |||| || |||| Sbjct 200 ACGAGGCCTATGGCTTCTGGACCGGCGACAACTGGAACCGGCGGCG-GCCGAAGGACGAG 258 Query 3693 ---CGCATCCAGATCGACACGAGCCACGAGGCGCTCGTGCGCGGCATGTTGTGCGAGGAC 3749 || || ||||| ||||||| |||||| | ||| | | | ||| Sbjct 259 AAGCGGGTCT---TCGACGTCAGCCACGCGGCGCTGAAGAACGGGGCGCTCGGGCCCGAC 315 Query 3750 GCGCAGTGGCGGCAGATCGTGACCGTGCTCGATGCGATGGCGGGCGGCTGCGACCTGTTC 3809 | | ||||| | |||| | |||||| ||||||||| |||||||| ||| Sbjct 316 AAGATCTTCCGGCATGTGCTGACGATCGAGGATGCGGAGGCGGGCGGTTGCGACCTCTTC 375 Query 3810 GACATCGACGAGCTGCGCCGCGAGTACAGCGCCGAGGAATTCGCGAATCTGCTCATGTGC 3869 ||||||||||||||||||| |||||| | | || || ||||| || ||||| |||||| Sbjct 376 GACATCGACGAGCTGCGCCAGGAGTACGGGCCGGACGAGTTCGCCAACCTGCTGATGTGC 435 Query 3870 CAGTTCATCGACGATTCGCTGTCGGTGTTCAAGCTGTCGGACCTGCAACGCTGCATGGTC 3929 ||||||||||||||| ||| |||||||||| |||| || ||||| | ||||||| || Sbjct 436 CAGTTCATCGACGATGCGCAGTCGGTGTTCCCGCTGGCGATGCTGCAGCCCTGCATGATC 495 Query 3930 GACTCGTGGG 3939 || || |||| Sbjct 496 GATTCCTGGG 505 >seq8309 Length=800 Score = 156 bits (172), Expect = 1e-33 Identities = 304/444 (68%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 24458 GTGTTCGGCTCCGGATCGATCCACGCGCTACCGCCGATCAGGTAGCCGTTCGCGACCT-- 24515 |||||| | ||||||| | ||| || ||||| | | |||||| | ||||| Sbjct 798 GTGTTCCGGGCCGGATCAAGCCAGGCCTCGCCGCCCAGGATGTAGCCCTG---GACCTTC 742 Query 24516 -GCTGCCGAAACCAGCCGTTGATGCTTTCCACGATGTCGCGCGCGAGCGACGGATTCAGC 24574 |||| || ||| | |||||||| | || | |||||||||||| || || ||||| Sbjct 741 AGCTGGCGGAACTTGGCGTTGATGGTCTCGATGATGTCGCGCGCCAGGCTGGGCGTCAGC 682 Query 24575 GGGCCGTCGACGACGGGCATC-TGCGCTTCGGCGATCGAATCGCCGGCCACCTGAGCGGT 24633 || |||||| | |||| ||| || ||||||| | || | | | ||||| Sbjct 681 GGCTTGTCGACCGCCCACATCATGCCCT-CGGCGATGGTGTCCTTGAGGATGTCGGCGGT 623 Query 24634 GCGCGTGTAGTTCTCGAACGCGAACTTCGGATCGTCCGAGCACGTGCGCTCGCCCCAGAA 24693 ||| | | | | |||||| ||| ||| ||||| ||||| || | | ||||||||| Sbjct 622 GCGGGCGGCGCTTTCGAACTGGAAGGCCGGCTCGTCAGAGCAGGTCTGGTTGCCCCAGAA 563 Query 24694 CCGGAAGCCGTT---GCGGTTCACGAGCGTCGTCACTTCGTGCTCGTTCAGGTAGCCCGC 24750 ||||||||||| |||| || |||| || || || |||||||| ||| || Sbjct 562 GCGGAAGCCGTTCTGGCGGATC---AGCGCGGTGACGCCGGCGGCGTTCAGGACGCCGGC 506 Query 24751 ATCGGTCGCCGGGTCCTGCAAATCCCACGACACGTCGGCGCTGATGCCGGACACGCCGTT 24810 ||||||| |||||||||| | | | | | | | | |||| |||||||| Sbjct 505 GTCGGTCGAGGGGTCCTGCAGGGCGAAGCTGATCTTGCGGGTCAGGCCGACGACGCCGTT 446 Query 24811 CACGACGACATTCGAAATCGTCTTGTGCCAGCCGATGTCGTTGTCGATCTTCGCGCGCAA 24870 || |||| || || ||||||||||||||||||| || | ||||| ||| ||||||| Sbjct 445 GACCGCGACGTTGGAGATCGTCTTGTGCCAGCCGACTTCCTCGTCGAGCTTGGCGCGCAG 386 Query 24871 GCCGGCGGCGATCGCCGGCGCCGG 24894 |||| |||||| ||||| ||||| Sbjct 385 GCCGACGGCGACCGCCGCGGCCGG 362 >seq6368 Length=557 Score = 98.7 bits (108), Expect = 2e-16 Identities = 344/517 (67%), Gaps = 39/517 (8%) Strand=Plus/Plus Query 810 CGAAGTCTTCGACCACGTAGGCGTCGTTCGACGATTCGTAGTTCTCGATGCGGTCGCGTT 869 ||| ||| |||| |||||| |||||||||| || || |||||||||| |||||| || | Sbjct 17 CGAGGTCCTCGAGGACGTAGCCGTCGTTCGAGGACTCATAGTTCTCGACGCGGTCCCGCT 76 Query 870 CCGGCACTTCCTTC-AGCGTGCGCCGGCGCGCGCCTTCCTGGTAGTAGATCGACAGATTT 928 ||| | | | | |||||| || ||| ||| ||||||||||||||||| || || Sbjct 77 T-GGCGTTGTCGACGATCGTGCGGCGACGCTTGCCGTCCTGGTAGTAGATCGAGAGGTTG 135 Query 929 GACAGCTTCGTGACCATCAGCGCGCGCTTCGGGAAGAACGGCACGCGCACGGCCGGCAGA 988 ||| |||| || | || || |||||||| | || || | || || || Sbjct 136 TCCAGGCGGGTGATCAGGATCGAGCCGGTCGGGAAGTAGGGGACCTGGGCGACCTGC--- 192 Query 989 TTGCCGATGCGCTTCTGGC-TCACG--ATCAG---ATCGGCCGCGAGCCGCTCGGTCGGC 1042 ||||| || | ||||| | || | ||| ||||| |||| | ||||||||| Sbjct 193 TTGCC---GCCCAGCTGGCGCCGCGACAGCAGGATGTCGGCGGCGACCTTTTCGGTCGGC 249 Query 1043 GCCTGCGTCG-CGTTGACGATCGGGAAATACTTGTCGTGCAGCAGCTCGCGGCCGCAGAT 1101 || | ||| |||||||| ||| ||||| ||||| | ||| | | || ||| Sbjct 250 TTCT-CCTCGATGTTGACGAGGTTGAAGTACTTCTCGTGGACCAGGCCCGGATCGACGAT 308 Query 1102 CACGACGAGGCCCGTGTCTTCCTGGAACCA-CGGGTC--GATCATCGACGACACGATATC 1158 ||| ||||| ||||| | || |||| | || | || | | | ||| || || Sbjct 309 GCAGACCAGGCCGGTGTCGTTGCGGTACCAGCTGGGCAGGAAC-TGGTGGAC-CG-CGTC 365 Query 1159 CATCACGAGCGCGTCGAGGTTCTCGTAAT------CGCCCGCCTTGCCGATGAGCACCTT 1212 ||| || || ||||||||||||| ||| | || | ||| ||||| | | | || Sbjct 366 CATGACCAGGGCGTCGAGGTTCTTGTAGTCGGCGCCGGCGGCCGAGCCGACGCGAATCT- 424 Query 1213 GCCGGCCTGCTTCGCGCCTTCG-TGCAGCACGCGCTGCGCTGCGCGCTCGC---GGTACT 1268 || ||| | | |||||||| || || ||| | || | ||||| ||||| Sbjct 425 --CGTCCTCTTCCTCGCCTTCGCTGAAG-ACGTGGGTCGGCATGTTCTCGCGCAGGTAC- 480 Query 1269 GTTGCAGCCAGCCGATGTTCACGTCCTGCAACAGCGG 1305 ||||||||||| |||| |||||||| | |||||| Sbjct 481 --TGCAGCCAGCCCTTGTTGACGTCCTGGAGCAGCGG 515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117263802209400