Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq14319 203 8e-48 seq8309 194 4e-45 seq6368 116 9e-22 >seq14319 Length=508 Score = 203 bits (224), Expect = 8e-48 Identities = 332/464 (72%), Gaps = 26/464 (6%) Strand=Plus/Minus Query 4624 AGCATCGCGAGCGGAAACACCGAC-GCGTTGTCGTCGATGAATACGCACATGAGCAGGTT 4682 |||||||| ||||| ||||||||| ||| ||||||||||| |||||| |||||||| Sbjct 479 AGCATCGCCAGCGGGAACACCGACTGCGCA-TCGTCGATGAACTGGCACATCAGCAGGTT 421 Query 4683 GGCGAAATCGAGTTCG--CTGTACTCCAGGCGCAGCTGGTCGAGGTCGAACAGGTTGCAG 4740 |||||| ||| | || | ||||||| ||||||||| ||||| |||||| |||| ||| Sbjct 420 GGCGAACTCG--TCCGGCCCGTACTCCTGGCGCAGCTCGTCGATGTCGAAGAGGTCGCAA 363 Query 4741 CCGCCGCGGAGCGCATCCTCCACCGTCACGATTTGGCGCCA---CTGGCCGTCCGCGCAG 4797 ||||| ||||||||| | ||||| | || || | || | || | || || Sbjct 362 CCGCCCGCCTCCGCATCCTCGATCGTCAGCACATGCCGGAAGATCTTGTCGGGCCCG-AG 304 Query 4798 CGCATGCCGTCGCGAAGCGCGGCGTGGCTCAGGTCGAGCTTGATCTGTTT---GTCCTT- 4853 ||| |||| ||||| |||||||| | ||||| || | | || |||||| Sbjct 303 CGCC--CCGTTCTTCAGCGCCGCGTGGCTGACGTCGAA---GACCCGCTTCTCGTCCTTC 249 Query 4854 GGCCTTGCCGC-GGTTGAACAGTG--CGCCGGACCAGAACGGATAGGCCTCATGCGACAA 4910 |||| ||||| |||| |||| |||||| |||||| ||||||||| ||| || Sbjct 248 GGCC--GCCGCCGGTTC--CAGTTGTCGCCGGTCCAGAAGCCATAGGCCTCGTGCATCAC 193 Query 4911 GCTGGACGGCGTGGAGAAGTAGGTCTGACGCCAGTGCTTGTGGATCGCCATGCCGGAGGC 4970 |||| |||| || | ||||| | ||||| | ||||||| ||||| ||||| Sbjct 192 GCTGCTGGGCGACGACAGATAGGTTTTCCGCCACTTCTTGTGGGCGGCCATCATCGAGGC 133 Query 4971 GACCTTGCGCAGTTCCTGGAAGCGCGGCACCCAGAAGTATTCATCGAAGTACAGGTTGCC 5030 |||||| ||| || | ||| || ||||||| | || |||||||| | ||||| Sbjct 132 GACCTTATTCAGGTCGTTGAACCGGAAGGTCCAGAAGAACTCGTCGAAGTAGAAATTGCC 73 Query 5031 GTGATACGACTGCGCGGTGCGGGCGTTCGTGCCGAGAAAGTAGA 5074 |||||| |||||| || |||||||||||||| || ||||||| Sbjct 72 GTGATAGCCCTGCGCCGTCCGGGCGTTCGTGCCCAGGAAGTAGA 29 >seq8309 Length=800 Score = 194 bits (214), Expect = 4e-45 Identities = 292/415 (70%), Gaps = 0/415 (0%) Strand=Plus/Plus Query 19470 GGCCACGGCCCGCGCGGTCGGCTTGCGCGCCAAGATCGACAACGACACCGGCTGGCACAA 19529 |||| |||| ||| |||||| ||||||||||| ||||| | || |||||||||||| Sbjct 364 GGCCGCGGCGGTCGCCGTCGGCCTGCGCGCCAAGCTCGACGAGGAAGTCGGCTGGCACAA 423 Query 19530 GACGCTTTCCAACGTGGCGGTGGGCGGCGTGACCGGTCTGTCGCGCGACGTGTTCTGGGA 19589 |||| | |||||||| ||||| |||||| ||| ||| | ||| | | || | Sbjct 424 GACGATCTCCAACGTCGCGGTCAACGGCGTCGTCGGCCTGACCCGCAAGATCAGCTTCGC 483 Query 19590 CCTTCAGGACCCGGCGACCGACGCGGGCTACCTGAACGCCAACGAGGTGACCACGCTGGT 19649 ||| |||||||| |||||||||| ||| |||||||||| || || ||| ||||| | Sbjct 484 CCTGCAGGACCCCTCGACCGACGCCGGCGTCCTGAACGCCGCCGGCGTCACCGCGCTGAT 543 Query 19650 TCACCGCGACGGCTACCGCTTCTGGGGCTCGCGCACGTGCAGTGCGGATCCGCTGTTCGC 19709 | || |||||| ||||||||||||| | || ||| || || ||| ||| Sbjct 544 CCGCCAGAACGGCTTCCGCTTCTGGGGCAACCAGACCTGCTCTGACGAGCCGGCCTTCCA 603 Query 19710 CTTCGAGAACTACACCCGCACCGCGCAGGTGCTGGCCGACACCATGGCGGAAGCACACAT 19769 ||||| | | | |||||||||| | | || |||||||| || || | || Sbjct 604 GTTCGAAAGCGCCGCCCGCACCGCCGACATCCTCAAGGACACCATCGCCGAGGGCATGAT 663 Query 19770 GTGGGCGAACGACCTACCGATGACGCCCACCCTCGTGCGCGATCTGCTGGAGGGCATCAA 19829 ||||||| |||| ||| ||||||||| ||| | |||||| | | ||| |||||| Sbjct 664 GTGGGCGGTCGACAAGCCGCTGACGCCCAGCCTGGCGCGCGACATCATCGAGACCATCAA 723 Query 19830 TGCCAAGTTGCGCATGCTGACCCGCAACGGATACCTGCTGGGCGGCGCCGCGTGG 19884 |||||||| ||| ||||| | | || ||| | |||||||||| || ||| Sbjct 724 CGCCAAGTTCCGCCAGCTGAAGGTCCAGGGCTACATCCTGGGCGGCGAGGCCTGG 778 >seq6368 Length=557 Score = 116 bits (128), Expect = 9e-22 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 7658 CTGGTGACGCGCCTGGACAACCTGTCCATTTACTACCAGGAGGGCGGGCGCCGTCGCACG 7717 ||| | || |||||||||||||| || || ||||||||||| ||| ||| || |||||| Sbjct 152 CTGATCACCCGCCTGGACAACCTCTCGATCTACTACCAGGACGGCAAGCGTCGCCGCACG 93 Query 7718 ATCCTGGACAACGCGAAGCGCGATCGCATCGAAAACTACGAGTCGAGCAACGACGCGTAC 7777 ||| | |||||||| ||||| || ||| |||| ||||| ||||| ||||||| ||| Sbjct 92 ATCGTCGACAACGCCAAGCGGGACCGCGTCGAGAACTATGAGTCCTCGAACGACGGCTAC 33 Query 7778 GTGATCGAAGACCT 7791 || |||| ||||| Sbjct 32 GTCCTCGAGGACCT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123886525950900