Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq11472 98.7 8e-16 seq334 91.5 1e-13 seq14182 87.8 1e-12 seq7244 82.4 6e-11 >seq11472 Length=8128 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/116 (80%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 ||||||| | ||| |||||||||||||| || || ||||||||| |||||||| |||| Sbjct 7541 AACCTCCACGCAGACGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTG 7482 Query 33959 CCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| || | || |||| |||||||| ||||| ||||| |||||||| || Sbjct 7481 -CAAGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 7427 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| |||||||||||||| || ||| ||||||||| |||||||| |||| | Sbjct 6059 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG-C 6001 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| |||||||| ||||| ||||| |||||||| || Sbjct 6000 AAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 5947 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/114 (79%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| |||||||||||||| || ||| ||||||||| |||||||| |||| | Sbjct 5158 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTG-C 5100 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || | || |||| |||||||| || || ||||| |||||||| || Sbjct 5099 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTC 5046 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| |||||||||||||| || ||| ||||||||| ||||| || ||||| Sbjct 5598 CCTCCACGCAGACGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTATAGTCTGCA 5539 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || | || |||| |||||||| ||||| |||| |||||||| || Sbjct 5538 AGAGTG-CGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTC 5486 >seq334 Length=28022 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||| |||||||||||| ||| ||||||||| |||||||| |||||| Sbjct 27869 CCACCGCGCAGGCGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCC 27810 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||||| ||||| ||||| |||||||| || Sbjct 27809 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 27757 >seq14182 Length=2243 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 1845 CCACCACGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCT 1904 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || | || |||| |||||||| ||||| ||||| |||||||| || Sbjct 1905 AGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTC 1957 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||| |||||||| || ||| ||||||||| |||||||| |||||| Sbjct 565 CCACCACGCAGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCC 624 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || | || |||| ||||||||||| || ||||| |||||||| || Sbjct 625 AGAGTGCGGC-CATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTC 677 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||||||||| || || |||||||||||||||||| ||||| Sbjct 793 CCACCACGCAGGCGCAGCACCAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCTGCT 852 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || || | ||||||||||| || ||||| |||||||| || Sbjct 853 AGGGTGCGGCCATCTTCTAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTC 905 >seq7244 Length=2690 Score = 82.4 bits (90), Expect = 6e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 33913 CGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CGCTC 33971 ||||| || ||||| | || ||||||||| ||||| || ||||| || || || | Sbjct 610 CGCAGTACAAGATGCAAGGTAGACTCCTTCTGGATGTTATAGTCTGC-AAGGGTGCGGCC 668 Query 33972 GTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTT 34031 || |||| ||||||||||||||||||| ||| ||||||||| || | || ||| || Sbjct 669 ATCTTCCAGCTGCTTGCCGGCAAATATCAAGCGTTGCTGATCCGGTGGGATGCCCTCCTT 728 Query 34032 GTCC 34035 |||| Sbjct 729 GTCC 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396983884012450