Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq10669 215 2e-51 seq11093 179 1e-40 seq15335 111 5e-20 >seq10669 Length=2887 Score = 215 bits (238), Expect = 2e-51 Identities = 335/474 (71%), Gaps = 21/474 (4%) Strand=Plus/Minus Query 42709 CTCGCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGAC 42768 ||||||||||||| | |||| |||| | |||||||||| || || |||| | ||| Sbjct 2452 CTCGCCGCCGATGGTGGGCACGCCGAAGGCGTTGCCGTAGCCGCCGACGCCGGCGACGAC 2393 Query 42769 GCCGTGCACGACCCGCGCCGTGTCG--GGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCC 42826 ||| |||| | | || ||| || | || | ||||||||||||||| |||| | Sbjct 2392 GCCCGAGACGAG--GTGGCGGGTCTTCGGATGTTCCGGCGCGCCGAAGCGCAGCGCGTTC 2335 Query 42827 ATGACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCC 42886 || ||||||||||||| |||||||||| || || |||||| | ||||||||| || ||| Sbjct 2334 ATCGCCGCGACCGGGCGCGCGCCCATGGTGAAGACGTCGCGCAGGATGCCGCCGACGCCC 2275 Query 42887 GTCGCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAAC 42946 ||||||||||||||| ||||||||||| | || ||||||||||| |||||| |||||| Sbjct 2274 GTCGCCGCGCCCTGGTAGGGCTCGATGTAGGACGGGTGGTTGTGGCTCTCCATCTTGAAG 2215 Query 42947 GTGACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATG 43006 | | || || ||||||| ||||| |||||| ||||||| || ||||| | | Sbjct 2214 ACGGCGACCTGGCCGTCGCCGATGTCGACGACGCCGGCGTTCTCGCCGGGCCCGATGACG 2155 Query 43007 AGGCGCTCGCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTC 43066 | | ||| || | ||| | | ||| | || || |||| | Sbjct 2154 A--CCTTCGGGCCGGTGGTC---GGCAGGGTGCGC----------AGCCAGCGCTTCGAC 2110 Query 43067 GACTTGTAGGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAG-GT 43125 |||||||||||||||||||| ||||||| ||||| | || | |||||| ||| || Sbjct 2109 GACTTGTAGGAGCAGTGCTCGTTCCACATCGCCGAGAAGATGCCGAGCTCG-GTGAGCGT 2051 Query 43126 GGGGCGGCGGCCGAGGATCTCCTTGATCCTCGCGTACTCGTCGTCCTTGAGGCC 43179 || |||||||| | || ||| | | |||||| ||| ||| ||||| Sbjct 2050 CGGTTCGCGGCCGATCAGGTCGAGGATGCGCTGGTACTCATCGGGCTTCAGGCC 1997 >seq11093 Length=1097 Score = 179 bits (198), Expect = 1e-40 Identities = 245/340 (72%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 42652 GCCCACCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTC 42711 |||||| | || ||||||||| || || | | |||| | || | ||| |||||| Sbjct 871 GCCCACGGTCATGGCGTTGACGAGGATGTTCCCGTCATAGGCCGCGTGGAAATTGGTCTC 812 Query 42712 GCCGCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCC 42771 ||| | | |||||| |||| ||| ||||||||| || ||| || | |||||| Sbjct 811 GCCCGCCACCGTCGGCACCCCGACGCAATTGCCGTAGCCGCCGATCCCCGCGACGACGCC 752 Query 42772 GTGCACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTC--CATG 42829 ||||||| || | | | ||| | ||||| | ||||||||||| || | ||| Sbjct 751 CTGCACGAGGTGCTTCATCTTGGGATGGTCGGGCCGTCCGAAGCGCAGCGCATTGGCATT 692 Query 42830 ACCGCGACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTC 42889 |||| || || |||||||||| || || |||||| | ||||||||||| || ||| Sbjct 691 G--GCGATGGGCCGCGCGCCCATGGTGAAGACGTCGCGCAGAATGCCGCCCACGCCGGTC 634 Query 42890 GCCGCGCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTG 42949 || || || || |||||||||| | |||||||||||||| |||||| |||||| | Sbjct 633 GCGGCCCCTTGATAGGGCTCGATATAGGAGGGGTGGTTGTGGCTCTCCATCTTGAAGATC 574 Query 42950 ACCGCCCATCCCTCGCCGACGTCGATGACGCCCGCGTTCT 42989 ||||| || ||||||| |||||| ||||||||||||| Sbjct 573 GCCGCCTGGCCGTCGCCGATGTCGATCACGCCCGCGTTCT 534 >seq15335 Length=5253 Score = 111 bits (122), Expect = 5e-20 Identities = 259/380 (68%), Gaps = 23/380 (6%) Strand=Plus/Minus Query 41559 GGATCGGCACGTC-GCCGGTCTGGTTGTAGAACGAGACGTTCCCGCCCGTGACC---GGG 41614 |||||| |||| | | ||||| |||||||| ||||||||| ||||| || ||| Sbjct 672 GGATCG-CACGGCCGTGGGTCTCGTTGTAGAGCGAGACGTT---GCCCGATACGATGGGG 617 Query 41615 GTGCCCAGGGCGTAGCAGCCGTCGGCGAGCCCGTCCACCGTCTGACCGAACTGCCACATG 41674 | | || || |||| | ||| ||| || | | | | ||||||| | |||| Sbjct 616 AAGTCGAGCGCACGGCAGGCCTCGCCGATGCCTTTGATGGCCATCACGAACTGGCCCATG 557 Query 41675 ACCTCGGGATTCTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGACCGCAGTGGGCACGGCG 41734 | |||||| ||||| || ||||||||| ||| |||||| | || | || ||||| Sbjct 556 ATCTCGGGCTTCTCGGGATTGCCGAAGTTGAGGTTGTCGGTCGCGGCGATCGGGTCGGCG 497 Query 41735 CCGGTGACCGCGACGTTGCGGTAGGCCTCGGCGAGGGCGAGCTGTGCGCCCGCGTACGGG 41794 ||| | ||| || |||||| || || || | || ||| ||||| |||| ||| Sbjct 496 CCGACGGCCGTGAGGTTGCGCCAGCATTCCGCCACCGCCTGCTTGCCGCCCTCGTAGGGG 437 Query 41795 TCGAGCTGGCAGTAGCG-GCCGTTCGCGTCGGTCGCGATCGCGAACCCGAGGCCCGACTC 41853 ||| || |||||||| | ||| | |||||| || | | | |||||||| | | Sbjct 436 TCGGCCTCACAGTAGCGCGGCGT-CACGTCGG---CG---GAGCAGGCGAGGCCCTTCGC 384 Query 41854 CT---CATCGACGCGGATCATGCCGGCGTCGTCG--GGGAAGCTGAGGGCCGTGTTGCCG 41908 | | |||||||||| |||||||||||| || ||| | || |||||||||| || Sbjct 383 CGTCCCGTCGACGCGGACGATGCCGGCGTCGCCGCCGGGGATCT--GGGCCGTGTTACCC 326 Query 41909 AGCACGTAGTAGTCGTACTG 41928 ||||| | ||||||||| Sbjct 325 TGCACGAGGCTGTCGTACTG 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148217837088150