Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq334 113 1e-19 seq14182 107 5e-18 seq7157 87.8 4e-12 seq5627 84.2 5e-11 >seq334 Length=28022 Score = 113 bits (124), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | | || ||||||| ||| || || ||||| || |||| Sbjct 27873 CATG-CCACCGCGCAGGCGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGT 27815 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || || || | || || || || |||||||||||||| || | Sbjct 27814 CTGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAG 27755 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || || || ||||| || || ||| || || || || || | |||||| Sbjct 27754 GGGGGATACCCTCCTTGTCCTGAATCTT-GCTCTTGACATTCTCAATGGTATCGCTGCTC 27696 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || ||||| |||||||| || || ||||| Sbjct 27695 TCCACCTCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 >seq14182 Length=2243 Score = 107 bits (118), Expect = 5e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | | ||| ||||| | ||| || || ||||| || ||||| Sbjct 562 TGGCCACCACGCAGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCT 621 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || ||||| || ||||| | || || || ||||||||||||||||| || | Sbjct 622 GCCAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGA 681 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || || ||||| || || ||| || || || || || | ||||| || Sbjct 682 GGAATACCCTCCTTGTCCTGAATCTT-GCTCTTGACATTCTCAATGGTGTCGCTGCTCTC 740 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| |||||||| || || ||||| Sbjct 741 CACCTCCAGTGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 791 >seq7157 Length=7910 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 325342 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 325401 |||||| || |||||||| | | |||||| || || || ||| | ||| | ||| Sbjct 6333 ATCCTTGCCTCCCTGCAAACGGGTACCGAATTGTCCACTGGGGTACAGCAGGTTCAGGTT 6274 Query 325402 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 325461 |||||| |||||| | |||||||||||| || || || | ||||||| || || || Sbjct 6273 ATTGCTACCGACAAAGTCCTGTGCAAGGCCTACAATAGTGCTTTGCAGACTGGCCTCTCC 6214 Query 325462 ATGGTGATAGGCGCTATGCTCTGCAACGTAACC 325494 |||||||||||| ||||| | || ||||| Sbjct 6213 ATGGTGATAGGCTGAGTGCTCCGACACATAACC 6181 >seq5627 Length=15911 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 65512 TCCGGTAGCATTCGAGGGCGCGCTGAAGCTCAAAGAGATTTCGTATATTCATGCGGAAGG 65571 |||| | || ||||||| |||||||||||||| ||||| || || || || || || || Sbjct 13136 TCCGCTCGCCGTCGAGGGGGCGCTGAAGCTCAAGGAGATCTCCTACATCCACGCCGAGGG 13195 Query 65572 TTTTCATGGTGGTGAGCTGAAGCATGGGCCTCTCGCTCTTATCGATGAGAAAACACCGGT 65631 | | | || ||||| ||||| ||||| |||| || ||||| |||| | ||||| Sbjct 13196 CTATGCCGCCGGCGAGCTCAAGCACGGGCCGATCGCGCTGATCGACGAGACGATGCCGGT 13255 Query 65632 CATCGT 65637 |||||| Sbjct 13256 CATCGT 13261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179409170125550