Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6527 132 1e-25 seq7157 87.8 4e-12 >seq6527 Length=17209 Score = 132 bits (146), Expect = 1e-25 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 333333 GCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGG 333392 ||||||||||| ||||| |||| || |||||| |||| || || | ||| ||||||||| Sbjct 14592 GCATAACGCCACTGGATGTACTCATTAGGTGTCTTGTCCAGGTGCTGCTCAATGTGGTGG 14533 Query 333393 AAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTG 333452 ||||||||||| |||||||| |||| ||| | || || |||||||| || | || | Sbjct 14532 AAAGCATGCTGAGCCACGTACGCAATACGTAGGTTGGGGTGCTTCCAGACTGTACCCTCA 14473 Query 333453 GTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATT 333508 ||||| || | | || ||||||||||| || || ||| || || |||||||| Sbjct 14472 GTGGCCTCAGTCTCTCCAGTGAGCACCTTGATCAGGGTGGACTTGCCGGCACCATT 14417 Score = 116 bits (128), Expect = 8e-21 Identities = 160/223 (72%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 334142 ATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGACC 334201 |||||| |||||||| |||| || |||| |||| ||||| || || | |||||| Sbjct 12984 ATCGTGCTCCACGTAGACAGTGCGCAGCTCATCTGCAGGAGGGAAGCCATCCACCTGACC 12925 Query 334202 GTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTA 334261 || ||||||| | ||||||||| || || ||| | || || || ||||||||||| || Sbjct 12924 ATTGGCAATAGCTCTCATCAGAGTGGACTTTCCCACACCATTGGGACCACACAGACCATA 12865 Query 334262 GCGGTTTCCACGCTTCAG----ATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCAT 334317 ||| || ||||| | || || | || |||||||| ||||| || |||||| Sbjct 12864 GCGATTGCCACGGATGAGGCGCATGGTGGCG----TTGTTCAGCAGAATCTTGGCACCAT 12809 Query 334318 ATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACTTC 334360 | || ||||| || ||||| | || || || ||||| |||| Sbjct 12808 AAGCAAGAGAGAACTCACAGTTGCAGAGTTCTTCACCTTCTTC 12766 >seq7157 Length=7910 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 297463 ATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTT 297522 |||||| || |||||||| | | |||||| || || || ||| | ||| | ||| Sbjct 6333 ATCCTTGCCTCCCTGCAAACGGGTACCGAATTGTCCACTGGGGTACAGCAGGTTCAGGTT 6274 Query 297523 ATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCC 297582 |||||| |||||| | |||||||||||| || || || | ||||||| || || || Sbjct 6273 ATTGCTACCGACAAAGTCCTGTGCAAGGCCTACAATAGTGCTTTGCAGACTGGCCTCTCC 6214 Query 297583 ATGGTGATAGGCGCTATGCTCTGCAACGTAACC 297615 |||||||||||| ||||| | || ||||| Sbjct 6213 ATGGTGATAGGCTGAGTGCTCCGACACATAACC 6181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102650730203750