Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3654 105 8e-18 seq11139 100 3e-16 seq2367 82.4 9e-11 >seq3654 Length=3311 Score = 105 bits (116), Expect = 8e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 ||||| || ||||| | ||||||||| || |||||| | ||| || | ||||| ||| Sbjct 1878 CCAATGCCTCCTGCACTCTTTGAGATGACTGCACACTCCTTAAGAGTGTCATAGATGCCG 1937 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 || || ||||||||| | ||| |||||||| || || |||||||| || ||| Sbjct 1938 TCAATGCTGTCACCCTTGCTGCAGATCAGGAAGCAACTGCTCAGCTGTGGCCTGGGGGTA 1997 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||||||||||||||||| || | || ||| ||||| Sbjct 1998 CCAGCGTTGAAGAGGGTGGGGCTTGCATGGGTGAAC 2033 >seq11139 Length=1709 Score = 100 bits (110), Expect = 3e-16 Identities = 248/370 (67%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || ||||| || || || ||| || | || |||||| || || Sbjct 545 CGGTCGAAGCGGCCCGGGCGCAGCAGCGCCGGGTCGAGCACGTCGGGGCGGTTGGTGGCG 486 Query 10847 GCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGA 10903 ||||||| | ||||||| ||||| || ||||| |||||||| | ||| || Sbjct 485 GCGATGATGATGATGCCC---TCGTTGGCCTCGAAGCCGTCCATCTCGACGAGGAGCTGG 429 Query 10904 TTGATGGTTTGTTCGCGTTCATCATTCGCGG-GCATACCACCCGCACTGCGTTGCTTACC 10962 |||| || || ||||| || || |||| | || | | | | | ||| || Sbjct 428 TTGAGCGTCTGCTCGCGCTCGTCGTTCGAGTTGCCGAGCCCGTGGCC-GCGCGAACGGCC 370 Query 10963 GACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAA 11022 |||||||| || || |||||||| ||||| || || || | ||| ||| || Sbjct 369 CACGGCGTCGATCTCGTCGATGAAGACGATGCAGGGCGCGTTCTTCTTGGCCTGTTCGAA 310 Query 11023 GATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGA 11082 || || || || | | || |||||||| || ||||| || || || | | | |||| Sbjct 309 CATGTCGCGCACACGGCTTGCGCCGACACCGACGAACATCTCGACGAAGTCCGAGCCGGA 250 Query 11083 ACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 11141 || | || |||||| ||| | |||||||||||||| |||||||| |||||||| | Sbjct 249 G-ATGGTGAAGAAGGGCACGCCCGCCTCACCCGCGATGGCGCGGGCGAGCAGGGTCTTGC 191 Query 11142 CCGTCCCAGG 11151 | || || || Sbjct 190 CGGTGCCGGG 181 >seq2367 Length=7310 Score = 82.4 bits (90), Expect = 9e-11 Identities = 226/341 (66%), Gaps = 9/341 (3%) Strand=Plus/Minus Query 113705 TGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCC 113764 ||||| ||| || |||||||| || ||||| |||| || | | |||||| ||| Sbjct 548 TGATCAATGTAGGCACCACGATCAGCAGCCATGTCAACCAGGACACGCTGCTTGATCTCC 489 Query 113765 CACACAGTTCTGTAGAGGTTCTTAATAT-CATCTGGGATATCCACGATATTTTGGATGGA 113823 |||||||| |||| || |||| | | ||| || || |||| | |||| Sbjct 488 CACACAGTCTTGTACAGCATCTTCAGGTGCATG-GGAATGTCCAAC---TCCTGGACACT 433 Query 113824 GCCACCCGCCTTGACCATGAGATCCTTCA--TATCCTTTGACCAGAGACCAATCTTTTTG 113881 |||| ||| |||| | ||||| || || || ||| | || | || | | Sbjct 432 GCCATTCGCAGCCACCAACTCGTTCTTCAGGTAGCCATT--CCACAAGCCCAGCTGTGTC 375 Query 113882 AGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA 113941 | ||| ||| || |||| |||||||| ||||| || | | || | || | Sbjct 374 AAATCAGCCAGCAGGTGCTGGTTGACAACTGTGAACTCTCCAGACAACACACGGCGCACA 315 Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| |||| ||||| |||||||||||||| ||||| |||| ||| ||| |||| | Sbjct 314 TAGATGTTGGATGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTG 255 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 114042 ||||||||||| || || | || || ||| |||| ||| Sbjct 254 GCTGTGGGCATCGGGGCAACAAGCAGTGAGTTGCGGACACC 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597232449223000