Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq334 125 7e-24 seq14182 116 4e-21 seq11472 102 8e-17 seq3654 84.2 2e-11 >seq334 Length=28022 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | | ||| ||||||| || || || || || |||||||| ||||| Sbjct 27869 CCACCGCGCAGGCGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCC 27810 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || ||||||||||| ||| | || || ||||||||||| || || Sbjct 27809 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGG 27750 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | ||||| | | ||||| Sbjct 27749 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACC 27690 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||||||||| |||| || || || || |||||||| Sbjct 27689 TCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 >seq14182 Length=2243 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || ||||| | || || || || || |||||||| ||||| | ||||| | ||||| Sbjct 583 ACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTGCGGCCATCTTCC 642 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 |||||||||||||| | || || ||||||||||| |||||||| || || || || || Sbjct 643 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGA 702 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || || ||| ||| ||| | || || | | ||||| || | || | ||||||| Sbjct 703 ATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACCTCCAGTGTGATGGTCTTG 762 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||| || || || || |||||||| Sbjct 763 CCAGTCAGTGTCTTGACAAAGATTTGCAT 791 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || ||||||||||| ||||| | |||||| | ||| Sbjct 808 AGCACCAGATGGAGTGTAGACTCCTTCTGAATGTTGTAGTCTGCTAGGGTGCGGCCATCT 867 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || |||||||||||||| |||| || ||||||||||| || || || ||| Sbjct 868 TCTAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCAGGGGGGATGCCT 918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| ||||| | ||||| | ||| Sbjct 1860 AGCACCAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCTAGTGTGCGGCCATCT 1919 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||||||||| ||| | || || ||||||||||| || || || ||| Sbjct 1920 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGGATGCCT 1970 >seq11472 Length=8128 Score = 102 bits (112), Expect = 8e-17 Identities = 127/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| ||||| | |||||| | || Sbjct 5143 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGGCCATCC 5084 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || || ||||||||||| |||||||| ||||| || || Sbjct 5083 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTATCC 5024 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || || || ||||||| ||| | || || | | ||||| ||||||| Sbjct 5023 TGGATCTTGCTCTTTACATTCTCAATGGTGTCGCTAGACTCCAC--CTACAGT 4973 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| ||||| | |||||| | || Sbjct 6044 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGACCATCC 5985 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||||||||| ||| | || || ||||||||||| |||||||| ||| Sbjct 5984 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATACCT 5934 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | | ||| ||||| | || || || || || |||||||| ||||| Sbjct 6953 ACCTCCACGCAGACGCAACACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGC 6894 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||||||||| ||| | || || ||||||||||| ||||| Sbjct 6893 AAGAGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGG 6834 Query 64336 AATTCCT 64342 ||| ||| Sbjct 6833 AATACCT 6827 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| ||||| | || || || || || |||||||| ||||| Sbjct 7540 ACCTCCACGCAGACGCAGCACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGC 7481 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| ||||||||||| ||| | || || ||||||||||| || || Sbjct 7480 AAGTGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 7421 Query 64336 AATTCCT 64342 || ||| Sbjct 7420 GATACCT 7414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| ||||| | ||||| | || Sbjct 6507 AGTACCAGATGCAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTGCGGCCATCC 6448 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || ||||||||||| ||| | || || ||||||||||| |||||||| ||| Sbjct 6447 TCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATACCT 6397 >seq3654 Length=3311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||||||||| || ||| | || || | || |||| | |||||| || | |||| Sbjct 923 GATGCCAAGTTGCACACCGCAGTCTCATCTGGGCTGGTGTACTCCACAATCTCAGTGCAC 982 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | || ||||| || ||||||||||| | ||| || |||| |||||| || || Sbjct 983 AGGTTGCTGCACTTGATTGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTTGCAAGCATCC 1042 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTC 154735 ||||||| ||||| ||| | || ||||| Sbjct 1043 TTGTACAGCATGTAGGGGTTTCCTGTTTC 1071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499543465789000