Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_010355.1 Length=62337 Score E Sequences producing significant alignments: (Bits) Value seq11925 138 5e-28 seq3220 107 8e-19 >seq11925 Length=6573 Score = 138 bits (152), Expect = 5e-28 Identities = 475/721 (66%), Gaps = 50/721 (7%) Strand=Plus/Plus Query 21935 GGTTGGGTTGGCGAGACCGAGA-GCCGCGGCGAGACCGCCACCTCCACGCTCGGCGTTCT 21993 || ||||| |||||||| | | || || || |||| ||| | ||||||||| || || Sbjct 3824 GGCTGGGTCGGCGAGACGGCGGCGCGGCCGC-AGACGGCCTCGCCCACGCTCGCCGAGCT 3882 Query 21994 GCGCATCCCGGTCCACG-AGATCTACGCGAAGCCGAAGGCGACGCAGAAGATGCTGGAAG 22052 ||| | | | | | | || ||||||| | |||| ||||||||||| | |||| || | Sbjct 3883 -CGCTTATCCGGCGATGGAGCTCTACGCCATGCCGGCGGCGACGCAGACGCTGCTCGACG 3941 Query 22053 ATGCGTCGATCAACGTCGAAGTGTGGCTTGCCGGCAAGATCG---CCGACAAGTTCGCTC 22109 | || | || ||||||| | ||||| |||| | || ||| ||| | ||||| | Sbjct 3942 ACGCCGTGGTCGACGTCGACGCCTGGCTCGCCGACGAGGTCGAGACCGCC---TTCGCGC 3998 Query 22110 -GCACCGAGGCGTCGGCGTTCATCTCCGGTGACGGCGTCAAAAAGCCCCGCGGCATCCTG 22168 ||| |||| | |||| ||| | | || ||||| ||| ||| |||| |||| Sbjct 3999 TGCAG-GAGGGGGCGGCCTTCGTGACGGGCAACGGCAGCAACCGGCCGACCGGCTTCCTC 4057 Query 22169 ACATATCCGAGCGGTACCAGCGGC-------------GCCAAGATCGAGCAGATCGCCAG 22215 | || ||||| | | ||| | |||| ||| | |||| || Sbjct 4058 GCGG-TCGACGCGGTGGCCGAGGCCGACTGGGAGTGGGGCAAGCTCGGCTACGTCGCGAG 4116 Query 22216 CGGCG------GCGCCA---CCTCGATCA--CCG-CCGATGGCCTGATCAACCTGATGAT 22263 ||||| ||||| || ||| || ||| |||| | |||||| |||| | Sbjct 4117 CGGCGCGGCCGGCGCCTTCGCCGCGAGCAACCCGTCCGACCGGCTGATCGACCTCGTCTA 4176 Query 22264 CGCGCTGAAGGACTACTA-CGCC----TCCGGCGCTTCGTGGCTGATGCGCCGCGCGACG 22318 ||| ||||| | | ||| |||| | | | ||||||| ||| |||||| | | Sbjct 4177 CGCCCTGAAAGCCGGCTATCGCCAGAATGCCAC-CTTCGTGA-TGAACCGCCGCACCCAG 4234 Query 22319 GTCGGCGCGGTCATGCTGCTGAAGGACGGCGACGGCCAGTACATCTGGCGTCCGGGCCTG 22378 | ||||| || ||||||||||| ||||||| | || |||||| ||| | Sbjct 4235 G-CGGCGA--TCCGCAAGCTGAAGGACGCCGACGGCAACTATCTCTGGCAGCCGCCAGCG 4291 Query 22379 GAGGCTGGCAAGCCGT-CCACCCTGCTCGGCTCCCCGGTCTATCAGGCTGCGGACATGCC 22437 | || ||| |||| ||| |||| | || | | ||| ||| | ||| ||||| Sbjct 4292 GCCGCGGGCG-GCCGCGCCAGCCTGATGAACTTCGCCGTCGCCGAGGTGGAGGAGATGCC 4350 Query 22438 GGCGGTTGGCGCGGGCGCCCTGCCCATCGCCTTCGGCAACTTCCGCGCCGGCTACACCGT 22497 || | | ||| |||| || | |||| ||||||| |||||||| |||| | ||| Sbjct 4351 GGACATCGCGGCGAACGCCATGGCGATCGGCTTCGGCGACTTCCGCCGCGGCGATCTCGT 4410 Query 22498 CGTGGATCGCCTGGGCATCACCGTCCTGCGCGACCCCTACTCGGCCAAGCCCTTCGTGGA 22557 ||| || || ||| | || |||||||||||||| ||||| ||||||| |||| Sbjct 4411 CGTCGACCGGGCGGGGGTGCGGGTGCTGCGCGACCCCTAGTCGGCGAAGCCCTACGTGCT 4470 Query 22558 GTTCTACAGCCGGAAGCGCGTCGGCGGCGACGTGGTGAACTTCGAAGCCTTCAAGCTGAT 22617 |||||||| ||||||||||||||||| |||| | ||||||| ||| |||| ||||| Sbjct 4471 GTTCTACACGACGAAGCGCGTCGGCGGCGGCGTGCAGGACTTCGACGCCATCAAACTGAT 4530 Query 22618 G 22618 | Sbjct 4531 G 4531 >seq3220 Length=1218 Score = 107 bits (118), Expect = 8e-19 Identities = 146/199 (73%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 6446 TCGCCGCCGACCGCCTGAAATCCTTCGTCGAAAGAATAGAACGACTTGAGGAGGAAAAGA 6505 ||||||| ||| ||| |||||||||| | || || || || ||||| || |||| Sbjct 911 TCGCCGCGAACCAGCTGCGCGCCTTCGTCGAGCGCATCGAGCGGCTCGAGGAAGAGAAGA 970 Query 6506 --GCGGTCTCCAGGAGGACATCAAGGAAGTCTACTCGGAAGCCAAGGGCACCGGGTTCGA 6563 ||| || | ||| ||||||||||| |||||| | ||||| ||||||| ||| ||||| Sbjct 971 AGGCGATCGC--GGACGACATCAAGGACGTCTACGCCGAAGCGAAGGGCAACGGCTTCGA 1028 Query 6564 CGTCAAGATCATTCGGCAGATCATC-CGCTTGCGGAAGATGGACAAGGCCGACCGGCAGG 6622 | ||||||| | |||| | ||| ||| |||| |||| |||| ||||| || ||| Sbjct 1029 CACCAAGATCCTCAAGCAGGTGATCGCGC-TGCGCAAGAAGGACCCCGCCGAGCGCGAGG 1087 Query 6623 AACAGCGCGCCATCCTCGA 6641 | ||| |||||||||| Sbjct 1088 AGCAGGAGACCATCCTCGA 1106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199314179383050