Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3654 113 4e-20 seq2367 100 3e-16 >seq3654 Length=3311 Score = 113 bits (124), Expect = 4e-20 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 94153 CAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212 ||||| ||||| | | | |||||| | ||||| ||||| | |||||||||||||| ||| Sbjct 1581 CAGGGCGGTGGCAAGCGCAAGGGTGCCTTCGCCATCTATATTGAGCCCTGGCACGCAGAC 1522 Query 94213 GTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGA 94269 | | ||| | |||||||| |||||||||||||| || ||||| | ||| | Sbjct 1521 ATCTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGGA---GGAGAACCGTGCCCGT 1465 Query 94270 GACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCC 94329 || || ||||| | |||||| | || || || ||||| || || ||| | || Sbjct 1464 GATCTGTTCTATGGCCTCTGGATCAATGATCTGTTCATGAAGCGAGTGGAGCAGGACCAA 1405 Query 94330 GCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGA 94383 | ||||||||| || || |||||||| ||| || ||| | || || || ||| Sbjct 1404 GACTGGAGTCTGTTCTGCCCCAATGAGGCTCCAGGCCTGGCAGAGGTCTGGGGA 1351 >seq2367 Length=7310 Score = 100 bits (110), Expect = 3e-16 Identities = 202/299 (68%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||| ||| | |||||||| ||||| |||||||| ||| ||| |||||| Sbjct 211 CACGGTGTCCGCAACTCACTGCTTGTTGCCCCGATGCCCACAGCCAGCACCAGCCAGATC 270 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||||||||||||| || || |||| ||| |||||| | || | || ||| | Sbjct 271 CTGGGCAACAACGAGTGCTTTGAGCCCTACACATCCAACATCTATGTGCGCCGTGTGTTG 330 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 | || || ||| | || ||||| ||||||| || || |||| ||||| || Sbjct 331 TCTGGAGAGTTCACAGTTGTCAACCAGCACCTGCTGGCTGATTTGACACAGCTGGGCTTG 390 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| || | | | |||||| | || | || || ||| |||||| | | | Sbjct 391 TGGAATGGCTACCTGAAGAACGAGTTGGTGGCTGCGAATGGCAGTGTCCAGGAGTT---G 447 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGT 95375 | || || | || | ||| ||| |||||||| |||||||||||| |||||| || Sbjct 448 GACATTCCCATGCACCTGAAGATGCTGTACAAGACTGTGTGGGAGATCAAGCAGCGTGT 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494622863951000