Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq14182 105 7e-18 seq3654 102 8e-17 seq334 91.5 1e-13 >seq14182 Length=2243 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| |||||| || | ||| | | |||||||| || ||||||||||| Sbjct 564 GCCACCACGCAGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGC 623 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || || || || || || |||| |||| |||||||| ||||| ||||| Sbjct 624 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGG 683 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | | || | ||||||| | ||||| Sbjct 684 AATACCCTCCTTGTC-CTGAATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCA 742 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || |||||||| || || ||||| || |||||| Sbjct 743 CCTCCAGTGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCATG 792 >seq3654 Length=3311 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 153596 GGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTC 153655 |||||| || |||| || || || || ||||| || | | | |||||| ||| ||||| Sbjct 916 GGCAATGGATGCCAAGTTGCACACCGCAGTCTCATCTGGGCTGGTGTACTCCACAATCTC 975 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| ||||||||||| || || ||||| || ||||| ||||||||||| ||||| Sbjct 976 AGTGCACAGGTTGCTGCACTTGATTGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTTGCA 1035 Query 153716 CGCGTCTTTGAAGAGCATGTACGG 153739 || || ||| | |||||||| || Sbjct 1036 AGCATCCTTGTACAGCATGTAGGG 1059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 197/291 (68%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 153230 CCACATGTCGTACTGTA--ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAG 153287 ||||||||||| ||| | |||| ||| | ||| | || ||||| || | || ||| Sbjct 212 CCACATGTCGTGCTGCAGTACAC-CCTTG-CTGACTGGGCTGCCCTCATAGGTCTCATAG 269 Query 153288 CTGCCGT-CGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTC 153346 | || | | | |||| ||| | |||||| | || ||| || ||||| ||||| || Sbjct 270 GTACCATGCTCCTTGG-CCAATGTGCAGCTTGTCTGGAGGGCTGAGTAGTAGATGGTCTC 328 Query 153347 GGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCAC 153406 ||| | | | ||||| | || || ||| ||| || | |||| | |||||||| Sbjct 329 AAAGATGTCTCTGTTGAGCTCTGCTGCCTCTGGGCTGTCAAAGGGCAAACCCAGCAGCAG 388 Query 153407 AAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCG 153466 |||| ||| ||||||||||||| ||| | || || || | || | |||||||||| Sbjct 389 GAAGGTGTCAGCCAGACCCTGGACACCCAGACCAATAGGCCTGTGGCGCACGTTGCTGCG 448 Query 153467 CCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTT 153517 | || || || | || |||| ||| ||||| || ||||||||| Sbjct 449 GCGTGCTGTCTCTGTTGGGTAGTAGTTGACGTCGATGATGCGGTTGAGGTT 499 >seq334 Length=28022 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | ||| | | |||||||| || ||||||||||| Sbjct 27870 GCCACCGCGCAGGCGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGC 27811 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || || | | |||| |||||||| ||||| || || Sbjct 27810 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGG 27751 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || | | || | ||| ||| | ||||| Sbjct 27750 GATACCCTCCTTGTC-CTGAATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCA 27692 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || |||||||| || || ||||| || ||||| Sbjct 27691 CCTCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496161751782000