Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq2433 104 6e-18 >seq2433 Length=22682 Score = 104 bits (114), Expect = 6e-18 Identities = 299/448 (67%), Gaps = 14/448 (3%) Strand=Plus/Minus Query 28729 GCCGTCGCGCGGAAGCCGTGGCCGGTCATCATCGTGCG-GTCGTAACCCATGTTGCGCAG 28787 |||||||||||||||||||| | |||| | |||| | | || | || | |||||| Sbjct 1374 GCCGTCGCGCGGAAGCCGTGCGCCGTCA-CTTCGTCCTTGCCGAAGCCGAGCCGGCGCAG 1316 Query 28788 CGCTGCGGTAACGGCGTTCTCTGACATCGGGCGTTTGGAATCG--CGGGCGCCAGAGAAC 28845 ||| || | | | ||||||||| ||||| || | | | | ||| | | |||| Sbjct 1315 CGCCGCATTGAGCGTGTTCTCTGAAATCGGCCGC--GCAGTGGTCCGGATACTCGGGAAC 1258 Query 28846 ACCCACTTGTGCCGGC--CGGTGATCGGCTTGATGTCCTCCAGGATCTGCAGCGCCTGCC 28903 ||| | | |||||| |||||| ||| || | || || | | | |||||| Sbjct 1257 ACCAAG--GCGCCGGCGCCGGTGAGCGGGCGGAGTGCTTCGAGCACCGTGACGGCCTGCG 1200 Query 28904 TGGACAGCGGCACCAGGTGCGCAGCACGCATCTTCATCTTGCTGGCAGGGATGGTCCACA 28963 || |||||||| | ||||| | ||||||||| || ||| || || |||||||| Sbjct 1199 AGGGCAGCGGCATCCGGTGCTCGCGGCGCATCTTCGTCCGGCTCGCGGGAATGGTCCATG 1140 Query 28964 CGGCCGCGTCGAGGTCGAACTCCTCCCATTCCGCATGCCGCAGTTCGCCAGGACGCAGGA 29023 ||| | |||||||||||||| ||| || || ||||| ||||| || || ||| ||| Sbjct 1139 TCGCCTTGACGAGGTCGAACTCCGACCACTCGGCCTGCCGGAGTTCACCCGGCCGCGGGA 1080 Query 29024 ACACCAGCGGCG-CCAGCCGCAGCGCCGCGCGTGT-GATGGCAGATCCGCTGTATGCCTC 29081 ||| |||| ||| |||||||||| || || | ||| | || | | | || Sbjct 1079 ACA-GGTAGGCGAGCAGTTGCAGCGCCGCCCGCGTCGTCGGCTG-GCCTTCGCAGCCTTC 1022 Query 29082 GATGGAGCGCAGCAGGCCACCCAGCTGCACGGGGTCAGTAATCGCCGCATGGTGGGCCTC 29141 ||| | || ||||| || || ||| | ||||| || | |||| |||| || | Sbjct 1021 GATCGCCCGAAGCAGCCCGCCGAGCGCGGCCGGGTCGGTCACGGCCGGGCGGTGCGCTAC 962 Query 29142 CTTAGGCGGCGCGAGCGCTCCTTTCAGG 29169 ||| || ||| ||| || || | |||| Sbjct 961 CTTCGGGCGCGTGAGGGCACCGTGCAGG 934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128771984479050