Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coelastrella_20sp._20M60_20[genbank_20GCA_5F001630525.1_202016-04- 25] 16,225 sequences; 80,221,759 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq14182 118 1e-21 seq334 116 4e-21 seq3654 89.7 5e-13 >seq14182 Length=2243 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| |||| ||| | || ||||| || || || ||||| || || Sbjct 565 CCACCACGCAGACGCAATACCAGATGCAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCC 624 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| |||||| |||||||| || ||||| Sbjct 625 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGAGGA 684 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||||| | || | |||||| | ||||| || Sbjct 685 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTCTCAATGGTGTCGCTGCTCTCCACC 744 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || ||||| ||||| || || ||||| || |||||| Sbjct 745 TCCAGTGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCATG 792 >seq334 Length=28022 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||||||||| ||| | || ||||| || || || ||||| || || Sbjct 27869 CCACCGCGCAGGCGCAACACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCC 27810 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| |||||| |||||||| || || || Sbjct 27809 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGGGGG 27750 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||||| | || | ||| || | ||||| || Sbjct 27749 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACATTCTCAATGGTATCGCTGCTCTCCACC 27690 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || ||||| || ||||| Sbjct 27689 TCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACAAAGATTTGCAT 27643 >seq3654 Length=3311 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 146634 GGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTC 146693 ||| || || |||||||| || || |||||||| || | | |||| ||||||||| Sbjct 916 GGCAATGGATGCCAAGTTGCACACCGCAGTCTCATCTGGGCTGGTGTACTCCACAATCTC 975 Query 146694 GGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCA 146753 | ||| ||||||||||||||||| |||||| || | ||||| || |||||| Sbjct 976 AGTGCACAGGTTGCTGCACTTGATTGTGCCCAGGTTCTGCTGGTTGCTTTTGCGGTTGCA 1035 Query 146754 GGGGTCCTTGTAGAGCATGTACGG 146777 | |||||||| |||||||| || Sbjct 1036 AGCATCCTTGTACAGCATGTAGGG 1059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475404362494000